FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7090, 170 aa
  1>>>pF1KB7090 170 - 170 aa - 170 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4112+/-0.00025; mu= 12.7130+/- 0.016
 mean_var=66.2772+/-13.133, 0's: 0 Z-trim(120.6): 19  B-trim: 64 in 1/57
 Lambda= 0.157540
 statistics sampled from 35965 (35985) to 35965 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.786), E-opt: 0.2 (0.422), width:  16
 Scan time:  6.060

The best scores are:                                      opt bits E(85289)
NP_542402 (OMIM: 607775) potassium voltage-gated c ( 221) 1087 254.8 6.3e-68


>>NP_542402 (OMIM: 607775) potassium voltage-gated chann  (221 aa)
 initn: 1087 init1: 1087 opt: 1087  Z-score: 1340.4  bits: 254.8 E(85289): 6.3e-68
Smith-Waterman score: 1087; 99.4% identity (100.0% similar) in 170 aa overlap (1-170:52-221)

                                             10        20        30
pF1KB7                               MLKMEPLNSTHPGTAASSSPLESRAAGGGS
                                     ::::::::::::::::::::::::::::::
NP_542 EQKNPLGLDDLGIQNLGQTVSLAPAVEAASMLKMEPLNSTHPGTAASSSPLESRAAGGGS
              30        40        50        60        70        80 

               40        50        60        70        80        90
pF1KB7 GNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMKPLPVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 GNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMKPLPVV
              90       100       110       120       130       140 

              100       110       120       130       140       150
pF1KB7 SGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADEELEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_542 SGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEET
             150       160       170       180       190       200 

              160       170
pF1KB7 SETPLNESSEGSSENIHQNS
       ::::::::::::::::::::
NP_542 SETPLNESSEGSSENIHQNS
             210       220 




170 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:37:11 2016 done: Fri Nov  4 04:37:12 2016
 Total Scan time:  6.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]