Result of FASTA (omim) for
pF1KB7092
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7092, 184 aa
1>>>pF1KB7092 184 - 184 aa - 184 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5124+/-0.000355; mu= 12.2131+/- 0.022
mean_var=68.8278+/-13.832, 0's: 0 Z-trim(114.1): 30 B-trim: 20 in 1/51
Lambda= 0.154594
statistics sampled from 23696 (23708) to 23696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.278), width: 16
Scan time: 5.940
The best scores are: opt bits E(85289)
NP_060755 (OMIM: 612980) U3 small nucleolar ribonu ( 184) 1208 278.0 5.9e-75
NP_001308630 (OMIM: 603631) 40S ribosomal protein ( 194) 195 52.1 6.3e-07
NP_001308631 (OMIM: 603631) 40S ribosomal protein ( 194) 195 52.1 6.3e-07
NP_001004 (OMIM: 603631) 40S ribosomal protein S9 ( 194) 195 52.1 6.3e-07
NP_001308633 (OMIM: 603631) 40S ribosomal protein ( 194) 195 52.1 6.3e-07
NP_001308634 (OMIM: 603631) 40S ribosomal protein ( 153) 134 38.4 0.0064
>>NP_060755 (OMIM: 612980) U3 small nucleolar ribonucleo (184 aa)
initn: 1208 init1: 1208 opt: 1208 Z-score: 1466.7 bits: 278.0 E(85289): 5.9e-75
Smith-Waterman score: 1208; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)
10 20 30 40 50 60
pF1KB7 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDF
130 140 150 160 170 180
pF1KB7 DLEA
::::
NP_060 DLEA
>>NP_001308630 (OMIM: 603631) 40S ribosomal protein S9 i (194 aa)
initn: 105 init1: 105 opt: 195 Z-score: 245.3 bits: 52.1 E(85289): 6.3e-07
Smith-Waterman score: 195; 31.2% identity (66.4% similar) in 125 aa overlap (29-150:27-149)
10 20 30 40 50 60
pF1KB7 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
.::... .: :. ... : . .:. ::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR
10 20 30 40 50
70 80 90 100 110
pF1KB7 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRLPTVLLK
.: : :.: :. . ::: .: .:.. .:...: :.. . .: .::: : ..:
NP_001 ELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRLQTQVFK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEER
: .:. .. : ....: :.:: .::. :.:.:
NP_001 LGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRK
120 130 140 150 160 170
180
pF1KB7 DDFDLEA
NP_001 NAKKGQGGAGAGDDEEED
180 190
>>NP_001308631 (OMIM: 603631) 40S ribosomal protein S9 i (194 aa)
initn: 105 init1: 105 opt: 195 Z-score: 245.3 bits: 52.1 E(85289): 6.3e-07
Smith-Waterman score: 195; 31.2% identity (66.4% similar) in 125 aa overlap (29-150:27-149)
10 20 30 40 50 60
pF1KB7 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
.::... .: :. ... : . .:. ::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR
10 20 30 40 50
70 80 90 100 110
pF1KB7 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRLPTVLLK
.: : :.: :. . ::: .: .:.. .:...: :.. . .: .::: : ..:
NP_001 ELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRLQTQVFK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEER
: .:. .. : ....: :.:: .::. :.:.:
NP_001 LGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRK
120 130 140 150 160 170
180
pF1KB7 DDFDLEA
NP_001 NAKKGQGGAGAGDDEEED
180 190
>>NP_001004 (OMIM: 603631) 40S ribosomal protein S9 isof (194 aa)
initn: 105 init1: 105 opt: 195 Z-score: 245.3 bits: 52.1 E(85289): 6.3e-07
Smith-Waterman score: 195; 31.2% identity (66.4% similar) in 125 aa overlap (29-150:27-149)
10 20 30 40 50 60
pF1KB7 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
.::... .: :. ... : . .:. ::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR
10 20 30 40 50
70 80 90 100 110
pF1KB7 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRLPTVLLK
.: : :.: :. . ::: .: .:.. .:...: :.. . .: .::: : ..:
NP_001 ELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRLQTQVFK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEER
: .:. .. : ....: :.:: .::. :.:.:
NP_001 LGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRK
120 130 140 150 160 170
180
pF1KB7 DDFDLEA
NP_001 NAKKGQGGAGAGDDEEED
180 190
>>NP_001308633 (OMIM: 603631) 40S ribosomal protein S9 i (194 aa)
initn: 105 init1: 105 opt: 195 Z-score: 245.3 bits: 52.1 E(85289): 6.3e-07
Smith-Waterman score: 195; 31.2% identity (66.4% similar) in 125 aa overlap (29-150:27-149)
10 20 30 40 50 60
pF1KB7 MVRKLKFHEQKLLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELAR
.::... .: :. ... : . .:. ::
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAAR
10 20 30 40 50
70 80 90 100 110
pF1KB7 RLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTA---SSFCRRRLPTVLLK
.: : :.: :. . ::: .: .:.. .:...: :.. . .: .::: : ..:
NP_001 ELLTLDEKDPRRLFEGNALLRRLVRIGVLD-EGKMKL-DYILGLKIEDFLERRLQTQVFK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEER
: .:. .. : ....: :.:: .::. :.:.:
NP_001 LGLAKSIHHARVLIRQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRK
120 130 140 150 160 170
180
pF1KB7 DDFDLEA
NP_001 NAKKGQGGAGAGDDEEED
180 190
>>NP_001308634 (OMIM: 603631) 40S ribosomal protein S9 i (153 aa)
initn: 124 init1: 105 opt: 134 Z-score: 173.4 bits: 38.4 E(85289): 0.0064
Smith-Waterman score: 134; 31.9% identity (64.9% similar) in 94 aa overlap (60-150:17-108)
30 40 50 60 70 80
pF1KB7 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV
:: . . :: . ::: .: .:..
NP_001 MPVARSWVCRKTYVTPRRPFEKSRLDQELKLIGNALLRRLVRIGVL
10 20 30 40
90 100 110 120 130 140
pF1KB7 PTRGSLELCDFVTA---SSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDP
.:...: :.. . .: .::: : ..:: .:. .. : ....: :.:: .::. :
NP_001 D-EGKMKL-DYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNIP
50 60 70 80 90 100
150 160 170 180
pF1KB7 AFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFDLEA
.:.:
NP_001 SFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED
110 120 130 140 150
184 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:38:55 2016 done: Fri Nov 4 04:38:56 2016
Total Scan time: 5.940 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]