Result of FASTA (ccds) for
pF1KB7094
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7094, 186 aa
1>>>pF1KB7094 186 - 186 aa - 186 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1683+/-0.000762; mu= 13.1774+/- 0.046
mean_var=56.8868+/-11.315, 0's: 0 Z-trim(106.8): 18 B-trim: 4 in 1/49
Lambda= 0.170047
statistics sampled from 9214 (9223) to 9214 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.283), width: 16
Scan time: 1.970
The best scores are: opt bits E(32554)
CCDS12132.1 TNFAIP8L1 gene_id:126282|Hs108|chr19 ( 186) 1202 302.8 8.2e-83
CCDS47257.1 TNFAIP8 gene_id:25816|Hs108|chr5 ( 188) 754 192.8 1e-49
CCDS47258.1 TNFAIP8 gene_id:25816|Hs108|chr5 ( 198) 754 192.9 1.1e-49
CCDS68933.1 TNFAIP8 gene_id:25816|Hs108|chr5 ( 210) 754 192.9 1.1e-49
CCDS81881.1 TNFAIP8L3 gene_id:388121|Hs108|chr15 ( 204) 694 178.1 2.9e-45
CCDS32241.1 TNFAIP8L3 gene_id:388121|Hs108|chr15 ( 292) 694 178.2 4e-45
CCDS985.1 TNFAIP8L2 gene_id:79626|Hs108|chr1 ( 184) 678 174.2 4e-44
>>CCDS12132.1 TNFAIP8L1 gene_id:126282|Hs108|chr19 (186 aa)
initn: 1202 init1: 1202 opt: 1202 Z-score: 1600.2 bits: 302.8 E(32554): 8.2e-83
Smith-Waterman score: 1202; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKML
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRM
130 140 150 160 170 180
pF1KB7 LDEGSL
::::::
CCDS12 LDEGSL
>>CCDS47257.1 TNFAIP8 gene_id:25816|Hs108|chr5 (188 aa)
initn: 754 init1: 754 opt: 754 Z-score: 1006.2 bits: 192.8 E(32554): 1e-49
Smith-Waterman score: 754; 57.7% identity (91.8% similar) in 182 aa overlap (2-183:4-185)
10 20 30 40 50
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQK
:.:..:.::.:::::.:.::.::.....:.:::::::::::::.:::.:...:::.:
CCDS47 MATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 MLKNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAA
..:::.:...::..: :..:.. .::::...:..... ::::.:::::::.:::: ::.
CCDS47 IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 GLLECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLG
: :::..::: . :::::::::.:.:: :..::.::::::.: .. ::...:.:..
CCDS47 LLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGIN
130 140 150 160 170 180
180
pF1KB7 RMLDEGSL
.::::
CCDS47 KMLDEENI
>>CCDS47258.1 TNFAIP8 gene_id:25816|Hs108|chr5 (198 aa)
initn: 754 init1: 754 opt: 754 Z-score: 1005.8 bits: 192.9 E(32554): 1.1e-49
Smith-Waterman score: 754; 57.7% identity (91.8% similar) in 182 aa overlap (2-183:14-195)
10 20 30 40
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATRE
:.:..:.::.:::::.:.::.::.....:.:::::::::::::.:::
CCDS47 MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTRE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 FTRSRKEAQKMLKNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVD
.:...:::.:..:::.:...::..: :..:.. .::::...:..... ::::.:::::::
CCDS47 YTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 FTFDRRVLAAGLLECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRS
.:::: ::. : :::..::: . :::::::::.:.:: :..::.::::::.: ..
CCDS47 YTFDRNVLSRLLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKP
130 140 150 160 170 180
170 180
pF1KB7 HLRRICEGLGRMLDEGSL
::...:.:...::::
CCDS47 HLQKLCDGINKMLDEENI
190
>>CCDS68933.1 TNFAIP8 gene_id:25816|Hs108|chr5 (210 aa)
initn: 754 init1: 754 opt: 754 Z-score: 1005.4 bits: 192.9 E(32554): 1.1e-49
Smith-Waterman score: 754; 57.7% identity (91.8% similar) in 182 aa overlap (2-183:26-207)
10 20 30
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSS
:.:..:.::.:::::.:.::.::.....:.:::::
CCDS68 MTLPRYCEVVLLIAHGEKMLKLVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSS
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB7 EVLDELYRATREFTRSRKEAQKMLKNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARC
::::::::.:::.:...:::.:..:::.:...::..: :..:.. .::::...:.....
CCDS68 EVLDELYRVTREYTQNKKEAEKIIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQ
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB7 LAMTAVSFHQVDFTFDRRVLAAGLLECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFL
::::.:::::::.:::: ::. : :::..::: . :::::::::.:.:: :..::.::
CCDS68 LAMTVVSFHQVDYTFDRNVLSRLLNECREMLHQIIQRHLTAKSHGRVNNVFDHFSDCEFL
130 140 150 160 170 180
160 170 180
pF1KB7 AALYGPAEPYRSHLRRICEGLGRMLDEGSL
::::.: .. ::...:.:...::::
CCDS68 AALYNPFGNFKPHLQKLCDGINKMLDEENI
190 200 210
>>CCDS81881.1 TNFAIP8L3 gene_id:388121|Hs108|chr15 (204 aa)
initn: 686 init1: 686 opt: 694 Z-score: 926.1 bits: 178.1 E(32554): 2.9e-45
Smith-Waterman score: 694; 55.1% identity (85.9% similar) in 185 aa overlap (2-186:20-204)
10 20 30 40
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDEL
:.::.::::::::::.:::.:::.:. .:.::::::..:::
CCDS81 MDSDSGEQSEGEPVTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLIDDTSSEIFDEL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 YRATREFTRSRKEAQKMLKNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAV
:..:.: :...:::.:..:.:.:::.:.:.: :..:.. :::.....::.. ::: :
CCDS81 YKVTKEHTHNKKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFRKKLNQTAMTIV
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 SFHQVDFTFDRRVLAAGLLECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGP
::..:..:::: ::. : ::.::.:. : ::: ..::::::::.:.:: .::..::.
CCDS81 SFYEVEYTFDRNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFADVEFLSTLYSL
130 140 150 160 170 180
170 180
pF1KB7 AEPYRSHLRRICEGLGRMLDEGSL
: .:.:::::....::: :
CCDS81 DGDCRPNLKRICEGINKLLDEKVL
190 200
>>CCDS32241.1 TNFAIP8L3 gene_id:388121|Hs108|chr15 (292 aa)
initn: 686 init1: 686 opt: 694 Z-score: 923.6 bits: 178.2 E(32554): 4e-45
Smith-Waterman score: 694; 55.1% identity (85.9% similar) in 185 aa overlap (2-186:108-292)
10 20 30
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLV
:.::.::::::::::.:::.:::.:. .:.
CCDS32 VAVDAQPAARSMDSDSGEQSEGEPVTAAGPDVFSSKSLALQAQKKILSKIASKTVANMLI
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB7 DDTSSEVLDELYRATREFTRSRKEAQKMLKNLVKVALKLGLLLRGDQLGGEELALLRRFR
::::::..::::..:.: :...:::.:..:.:.:::.:.:.: :..:.. :::.....::
CCDS32 DDTSSEIFDELYKVTKEHTHNKKEAHKIMKDLIKVAIKIGILYRNNQFSQEELVIVEKFR
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB7 HRARCLAMTAVSFHQVDFTFDRRVLAAGLLECRDLLHQAVGPHLTAKSHGRINHVFGHLA
.. ::: :::..:..:::: ::. : ::.::.:. : ::: ..::::::::.:.:
CCDS32 KKLNQTAMTIVSFYEVEYTFDRNVLSNLLHECKDLVHELVQRHLTPRTHGRINHVFNHFA
200 210 220 230 240 250
160 170 180
pF1KB7 DCDFLAALYGPAEPYRSHLRRICEGLGRMLDEGSL
: .::..::. : .:.:::::....::: :
CCDS32 DVEFLSTLYSLDGDCRPNLKRICEGINKLLDEKVL
260 270 280 290
>>CCDS985.1 TNFAIP8L2 gene_id:79626|Hs108|chr1 (184 aa)
initn: 676 init1: 607 opt: 678 Z-score: 905.6 bits: 174.2 E(32554): 4e-44
Smith-Waterman score: 678; 57.0% identity (83.3% similar) in 186 aa overlap (1-186:1-184)
10 20 30 40 50 60
pF1KB7 MDTFSTKSLALQAQKKLLSKMASKAVVAVLVDDTSSEVLDELYRATREFTRSRKEAQKML
:..::.:::::::.::::::::...:. ...:.:::::::::::...:.:.:: .::...
CCDS98 MESFSSKSLALQAEKKLLSKMAGRSVAHLFIDETSSEVLDELYRVSKEYTHSRPQAQRVI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 KNLVKVALKLGLLLRGDQLGGEELALLRRFRHRARCLAMTAVSFHQVDFTFDRRVLAAGL
:.:.:::.:...: :. ..: :::: :::.. : ::::.:: .:::::. :::. :
CCDS98 KDLIKVAIKVAVLHRNGSFGPSELALATRFRQKLRQGAMTALSFGEVDFTFEAAVLAGLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 LECRDLLHQAVGPHLTAKSHGRINHVFGHLADCDFLAALYGPAEPYRSHLRRICEGLGRM
::::.: . : ::: :::::: ::: :..: .:.::::: . .:: .::.:: ..
CCDS98 TECRDVLLELVEHHLTPKSHGRIRHVFDHFSDPGLLTALYGP--DFTQHLGKICDGLRKL
130 140 150 160 170
pF1KB7 LDEGSL
::::.:
CCDS98 LDEGKL
180
186 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 04:39:28 2016 done: Fri Nov 4 04:39:28 2016
Total Scan time: 1.970 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]