FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7096, 193 aa
  1>>>pF1KB7096 193 - 193 aa - 193 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3117+/-0.000242; mu= 10.4785+/- 0.015
 mean_var=113.1812+/-22.591, 0's: 0 Z-trim(124.7): 1  B-trim: 42 in 1/58
 Lambda= 0.120556
 statistics sampled from 46913 (46914) to 46913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.859), E-opt: 0.2 (0.55), width:  16
 Scan time:  7.140

The best scores are:                                      opt bits E(85289)
NP_001014301 (OMIM: 611296) annexin-2 receptor [Ho ( 193) 1445 260.6 1.1e-69


>>NP_001014301 (OMIM: 611296) annexin-2 receptor [Homo s  (193 aa)
 initn: 1445 init1: 1445 opt: 1445  Z-score: 1371.8  bits: 260.6 E(85289): 1.1e-69
Smith-Waterman score: 1445; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)

               10        20        30        40        50        60
pF1KB7 MEQHFLGCVKRAWDSAEVAPEPQPPPIVSSEDRGPWPLPLYPVLGEYSLDSCDLGLLSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEQHFLGCVKRAWDSAEVAPEPQPPPIVSSEDRGPWPLPLYPVLGEYSLDSCDLGLLSSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 CWRLPGVYWQNGLSPGVQSTLEPSTAKPTEFSWPGTQKQQEAPVEEVGQAEEPDRLRLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CWRLPGVYWQNGLSPGVQSTLEPSTAKPTEFSWPGTQKQQEAPVEEVGQAEEPDRLRLQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LPWSSPLHPWDRQQDTEVCDSGCLLERRHPPALQPWRHLPGFSDCLEWILRVGFAAFSVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPWSSPLHPWDRQQDTEVCDSGCLLERRHPPALQPWRHLPGFSDCLEWILRVGFAAFSVL
              130       140       150       160       170       180

              190   
pF1KB7 WACCSRICGAKQP
       :::::::::::::
NP_001 WACCSRICGAKQP
              190   




193 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:40:37 2016 done: Fri Nov  4 04:40:38 2016
 Total Scan time:  7.140 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]