FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7105, 224 aa
  1>>>pF1KB7105 224 - 224 aa - 224 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3388+/-0.000731; mu= 2.4981+/- 0.044
 mean_var=204.8750+/-41.654, 0's: 0 Z-trim(117.1): 6  B-trim: 0 in 0/55
 Lambda= 0.089604
 statistics sampled from 17774 (17779) to 17774 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.546), width:  16
 Scan time:  2.650

The best scores are:                                      opt bits E(32554)
CCDS10652.1 C16orf54 gene_id:283897|Hs108|chr16    ( 224) 1602 218.3 3.2e-57


>>CCDS10652.1 C16orf54 gene_id:283897|Hs108|chr16         (224 aa)
 initn: 1602 init1: 1602 opt: 1602  Z-score: 1140.7  bits: 218.3 E(32554): 3.2e-57
Smith-Waterman score: 1602; 100.0% identity (100.0% similar) in 224 aa overlap (1-224:1-224)

               10        20        30        40        50        60
pF1KB7 MPLTPEPPSGRVEGPPAWEAAPWPSLPCGPCIPIMLVLATLAALFILTTAVLAERLFRRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPLTPEPPSGRVEGPPAWEAAPWPSLPCGPCIPIMLVLATLAALFILTTAVLAERLFRRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LRPDPSHRAPTLVWRPGGELWIEPMGTARERSEDWYGSAVPLLTDRAPEPPTQVGTLEAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LRPDPSHRAPTLVWRPGGELWIEPMGTARERSEDWYGSAVPLLTDRAPEPPTQVGTLEAR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 ATAPPAPSAPNSAPSNLGPQTVLEVPARSTFWGPQPWEGRPPATGLVSWAEPEQRPEASV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ATAPPAPSAPNSAPSNLGPQTVLEVPARSTFWGPQPWEGRPPATGLVSWAEPEQRPEASV
              130       140       150       160       170       180

              190       200       210       220    
pF1KB7 QFGSPQARRQRPGSPDPEWGLQPRVTLEQISAFWKREGRTSVGF
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QFGSPQARRQRPGSPDPEWGLQPRVTLEQISAFWKREGRTSVGF
              190       200       210       220    




224 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:44:22 2016 done: Fri Nov  4 04:44:23 2016
 Total Scan time:  2.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]