Result of FASTA (ccds) for
pF1KB7107
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7107, 229 aa
1>>>pF1KB7107 229 - 229 aa - 229 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8594+/-0.0015; mu= 9.1694+/- 0.090
mean_var=71.8732+/-14.408, 0's: 0 Z-trim(97.6): 64 B-trim: 0 in 0/48
Lambda= 0.151283
statistics sampled from 5113 (5164) to 5113 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.34), E-opt: 0.2 (0.155), width: 16
Scan time: 0.870
The best scores are: opt bits E(33420)
CCDS11177.1 UBB gene_id:7314|Hs109|chr17 ( 229) 1456 328.0 3.1e-90
CCDS9260.1 UBC gene_id:7316|Hs109|chr12 ( 685) 1443 325.4 5.9e-89
CCDS12382.1 UBA52 gene_id:7311|Hs109|chr19 ( 128) 483 115.6 1.6e-26
CCDS33202.1 RPS27A gene_id:6233|Hs109|chr2 ( 156) 482 115.4 2.2e-26
CCDS9621.1 NEDD8 gene_id:4738|Hs109|chr14 ( 81) 303 76.2 7.1e-15
>>CCDS11177.1 UBB gene_id:7314|Hs109|chr17 (229 aa)
initn: 1456 init1: 1456 opt: 1456 Z-score: 1733.6 bits: 328.0 E(33420): 3.1e-90
Smith-Waterman score: 1456; 100.0% identity (100.0% similar) in 229 aa overlap (1-229:1-229)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
190 200 210 220
>>CCDS9260.1 UBC gene_id:7316|Hs109|chr12 (685 aa)
initn: 1443 init1: 1443 opt: 1443 Z-score: 1710.7 bits: 325.4 E(33420): 5.9e-89
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 FAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKA
130 140 150 160 170 180
190 200 210 220
pF1KB7 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKT
190 200 210 220 230 240
CCDS92 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
250 260 270 280 290 300
>--
initn: 1443 init1: 1443 opt: 1443 Z-score: 1710.7 bits: 325.4 E(33420): 5.9e-89
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:229-456)
10 20 30
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
200 210 220 230 240 250
40 50 60 70 80 90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
260 270 280 290 300 310
100 110 120 130 140 150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
320 330 340 350 360 370
160 170 180 190 200 210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
380 390 400 410 420 430
220
pF1KB7 YNIQKESTLHLVLRLRGGC
::::::::::::::::::
CCDS92 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR
440 450 460 470 480 490
>--
initn: 1443 init1: 1443 opt: 1443 Z-score: 1710.7 bits: 325.4 E(33420): 5.9e-89
Smith-Waterman score: 1443; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:457-684)
10 20 30
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKI
::::::::::::::::::::::::::::::
CCDS92 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI
430 440 450 460 470 480
40 50 60 70 80 90
pF1KB7 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 QDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIT
490 500 510 520 530 540
100 110 120 130 140 150
pF1KB7 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
550 560 570 580 590 600
160 170 180 190 200 210
pF1KB7 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS92 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD
610 620 630 640 650 660
220
pF1KB7 YNIQKESTLHLVLRLRGGC
::::::::::::::::::
CCDS92 YNIQKESTLHLVLRLRGGV
670 680
>>CCDS12382.1 UBA52 gene_id:7311|Hs109|chr19 (128 aa)
initn: 483 init1: 483 opt: 483 Z-score: 589.9 bits: 115.6 E(33420): 1.6e-26
Smith-Waterman score: 483; 98.7% identity (100.0% similar) in 77 aa overlap (1-77:1-77)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
::::::::::::::::.
CCDS12 IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
70 80 90 100 110 120
>>CCDS33202.1 RPS27A gene_id:6233|Hs109|chr2 (156 aa)
initn: 482 init1: 482 opt: 482 Z-score: 587.4 bits: 115.4 E(33420): 2.2e-26
Smith-Waterman score: 482; 97.4% identity (98.7% similar) in 78 aa overlap (1-78:1-78)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
:::::::::::::::: .
CCDS33 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
70 80 90 100 110 120
>>CCDS9621.1 NEDD8 gene_id:4738|Hs109|chr14 (81 aa)
initn: 314 init1: 303 opt: 303 Z-score: 380.8 bits: 76.2 E(33420): 7.1e-15
Smith-Waterman score: 303; 57.9% identity (82.9% similar) in 76 aa overlap (1-76:1-76)
10 20 30 40 50 60
pF1KB7 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
: : ::::::: : ...::.: .: .: ....::::::.:::::..:::..: .: .::.
CCDS96 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI
: :.::::: ::::
CCDS96 ILGGSVLHLVLALRGGGGLRQ
70 80
229 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Oct 24 21:54:21 2019 done: Thu Oct 24 21:54:22 2019
Total Scan time: 0.870 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]