FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7109, 248 aa
  1>>>pF1KB7109 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8337+/-0.000819; mu= 13.2033+/- 0.050
 mean_var=93.5044+/-18.845, 0's: 0 Z-trim(109.7): 54  B-trim: 0 in 0/51
 Lambda= 0.132635
 statistics sampled from 11040 (11093) to 11040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.341), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS6267.1 PLEKHF2 gene_id:79666|Hs108|chr8        ( 249) 1690 333.0 1.1e-91
CCDS12417.1 PLEKHF1 gene_id:79156|Hs108|chr19      ( 279) 1002 201.4 5.4e-52


>>CCDS6267.1 PLEKHF2 gene_id:79666|Hs108|chr8             (249 aa)
 initn: 1764 init1: 1689 opt: 1690  Z-score: 1759.2  bits: 333.0 E(32554): 1.1e-91
Smith-Waterman score: 1690; 99.6% identity (99.6% similar) in 249 aa overlap (1-248:1-249)

               10        20        30        40        50        60
pF1KB7 MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAGDMATCQPARSDSYSQSLKSPLNDMSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAGDMATCQPARSDSYSQSLKSPLNDMSD
              190       200       210       220       230       240

                
pF1KB7 DDDDD-SSD
       ::::: :::
CCDS62 DDDDDDSSD
                

>>CCDS12417.1 PLEKHF1 gene_id:79156|Hs108|chr19           (279 aa)
 initn: 1059 init1: 952 opt: 1002  Z-score: 1047.0  bits: 201.4 E(32554): 5.4e-52
Smith-Waterman score: 1002; 56.2% identity (78.9% similar) in 251 aa overlap (1-248:1-251)

               10        20        30        40        50        60
pF1KB7 MVDRLANSEANTRRISIVENCFGAAGQPLTIPGRVLIGEGVLTKLCRKKPKARQFFLFND
       :::.:::.: :..::. ::.::::.::::..:::::.::::::: :::: : : ::::::
CCDS12 MVDHLANTEINSQRIAAVESCFGASGQPLALPGRVLLGEGVLTKECRKKAKPRIFFLFND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ILVYGNIVIQKKKYNKQHIIPLENVTIDSIKDEGDLRNGWLIKTPTKSFAVYAATATEKS
       :::::.::..:.:: .:::::::.::.. . .  . .: :.:::  :::.: ::.:::..
CCDS12 ILVYGSIVLNKRKYRSQHIIPLEEVTLELLPETLQAKNRWMIKTAKKSFVVSAASATERQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EWMNHINKCVTDLLSKSGKTPSNEHAAVWVPDSEATVCMRCQKAKFTPVNRRHHCRKCGF
       ::..::..::   :  .:. ::.:::: :.::. . .:::: ...:. ..::::::::::
CCDS12 EWISHIEECVRRQLRATGRPPSTEHAAPWIPDKATDICMRCTQTRFSALTRRHHCRKCGF
              130       140       150       160       170       180

              190       200       210          220       230       
pF1KB7 VVCGPCSEKRFLLPSQSSKPVRICDFCYDLLSAG---DMATCQPARSDSYSQSLKSPLND
       :::. ::..:::::  : ::::.:..::  :.:    . :  : : : .    :  :.  
CCDS12 VVCAECSRQRFLLPRLSPKPVRVCSLCYRELAAQQRQEEAEEQGAGSPGQPAHLARPICG
              190       200       210       220       230       240

       240                                    
pF1KB7 MSDDDDDDSSD                            
        :. :::::..                            
CCDS12 ASSGDDDDSDEDKEGSRDGDWPSSVEFYASGVAWSAFHS
              250       260       270         




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:40:42 2016 done: Sat Nov  5 01:40:43 2016
 Total Scan time:  2.330 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]