FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7116, 280 aa
  1>>>pF1KB7116 280 - 280 aa - 280 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6815+/-0.000345; mu= 0.7153+/- 0.022
 mean_var=176.9786+/-35.561, 0's: 0 Z-trim(120.7): 3  B-trim: 33 in 1/53
 Lambda= 0.096408
 statistics sampled from 36203 (36206) to 36203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.425), width:  16
 Scan time:  7.270

The best scores are:                                      opt bits E(85289)
XP_011539001 (OMIM: 616783) PREDICTED: UBX domain- ( 280) 1855 269.4 5.2e-72
NP_689589 (OMIM: 616783) UBX domain-containing pro ( 280) 1855 269.4 5.2e-72
XP_005245799 (OMIM: 616783) PREDICTED: UBX domain- ( 280) 1855 269.4 5.2e-72


>>XP_011539001 (OMIM: 616783) PREDICTED: UBX domain-cont  (280 aa)
 initn: 1855 init1: 1855 opt: 1855  Z-score: 1413.8  bits: 269.4 E(85289): 5.2e-72
Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB7 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
              190       200       210       220       230       240

              250       260       270       280
pF1KB7 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
       ::::::::::::::::::::::::::::::::::::::::
XP_011 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
              250       260       270       280

>>NP_689589 (OMIM: 616783) UBX domain-containing protein  (280 aa)
 initn: 1855 init1: 1855 opt: 1855  Z-score: 1413.8  bits: 269.4 E(85289): 5.2e-72
Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB7 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
              190       200       210       220       230       240

              250       260       270       280
pF1KB7 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
       ::::::::::::::::::::::::::::::::::::::::
NP_689 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
              250       260       270       280

>>XP_005245799 (OMIM: 616783) PREDICTED: UBX domain-cont  (280 aa)
 initn: 1855 init1: 1855 opt: 1855  Z-score: 1413.8  bits: 269.4 E(85289): 5.2e-72
Smith-Waterman score: 1855; 100.0% identity (100.0% similar) in 280 aa overlap (1-280:1-280)

               10        20        30        40        50        60
pF1KB7 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MATEAPVNIAPPECSTVVSTAVDSLIWQPNSLNMHMIRPKSAKGRTRPSLQKSQGVEVCA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HHIPSPPPAIPYELPSSQKPGACAPKSPNQGASDEIPELQQQVPTGASSSLNKYPVLPSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRKNLEEEAVETVAKKASSLQLSSIRALYQDETGTMKTSEEDSRARACAVERKFIVRTKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QGSSRAGNLEEPSDQEPRLLLAVRSPTGQRFVRHFRPTDDLQTIVAVAEQKNKTSYRHCS
              190       200       210       220       230       240

              250       260       270       280
pF1KB7 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
       ::::::::::::::::::::::::::::::::::::::::
XP_005 IETMEVPRRRFSDLTKSLQECRIPHKSVLGISLEDGEGWP
              250       260       270       280




280 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:53:43 2016 done: Fri Nov  4 04:53:44 2016
 Total Scan time:  7.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]