FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7118, 283 aa
  1>>>pF1KB7118 283 - 283 aa - 283 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4693+/-0.000663; mu= 8.0103+/- 0.040
 mean_var=147.5397+/-29.563, 0's: 0 Z-trim(116.3): 4  B-trim: 0 in 0/56
 Lambda= 0.105589
 statistics sampled from 16948 (16952) to 16948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.521), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS9119.1 TMEM119 gene_id:338773|Hs108|chr12      ( 283) 1862 294.1 7.8e-80


>>CCDS9119.1 TMEM119 gene_id:338773|Hs108|chr12           (283 aa)
 initn: 1862 init1: 1862 opt: 1862  Z-score: 1546.7  bits: 294.1 E(32554): 7.8e-80
Smith-Waterman score: 1862; 99.6% identity (99.6% similar) in 283 aa overlap (1-283:1-283)

               10        20        30        40        50        60
pF1KB7 MVSAAAPSLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MVSAAAPSLLILLLLLLGSVPATDARSVPLKATFLEDVAGSGEAEGSSASSPSLPPPWTP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ALSPTSMGPQPTTLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAFLLMFIVCAAVITRQ
       ::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 ALSPTSMGPQPITLGGPSPPTNFLDGIVDFFRQYVMLIAVVGSLAFLLMFIVCAAVITRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KQKASAYYPSSFPKKKYVDQSDRAGGPRAFSEVPDRAPDSRPEEALDSSRQLQADILAAT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 QNLKSPTRAALGGGDGARMVEGRGAEEEEKGSQEGDQEVQGHGVPVETPEAQEEPCSGVL
              190       200       210       220       230       240

              250       260       270       280   
pF1KB7 EGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPCACSSVHPSV
       :::::::::::::::::::::::::::::::::::::::::::
CCDS91 EGAVVAGEGQGELEGSLLLAQEAQGPVGPPESPCACSSVHPSV
              250       260       270       280   




283 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:54:16 2016 done: Fri Nov  4 04:54:17 2016
 Total Scan time:  3.120 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]