FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7121, 305 aa
  1>>>pF1KB7121 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9550+/-0.000676; mu= 13.3818+/- 0.041
 mean_var=80.0460+/-15.615, 0's: 0 Z-trim(111.6): 7  B-trim: 8 in 1/50
 Lambda= 0.143352
 statistics sampled from 12484 (12487) to 12484 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.384), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS6310.1 TMEM74 gene_id:157753|Hs108|chr8        ( 305) 1998 422.1 2.6e-118
CCDS13011.1 TMEM74B gene_id:55321|Hs108|chr20      ( 256)  498 111.9 5.4e-25


>>CCDS6310.1 TMEM74 gene_id:157753|Hs108|chr8             (305 aa)
 initn: 1998 init1: 1998 opt: 1998  Z-score: 2237.6  bits: 422.1 E(32554): 2.6e-118
Smith-Waterman score: 1998; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB7 MELHYLAKKSNQADLCDARDWSSRGLPGDQADTAATRAALCCQKQCASTPRATEMEGSKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 MELHYLAKKSNQADLCDARDWSSRGLPGDQADTAATRAALCCQKQCASTPRATEMEGSKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SSSPASPSSSLQNSTLQPDAFPPGLLHSGNNQITAERKVCNCCSQELETSFTYVDKNINL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 SSSPASPSSSLQNSTLQPDAFPPGLLHSGNNQITAERKVCNCCSQELETSFTYVDKNINL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EQRNRSSPSAKGHNHPGELGWENPNEWSQEAAISLISEEEDDTSSEATSSGKSIDYGFIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 EQRNRSSPSAKGHNHPGELGWENPNEWSQEAAISLISEEEDDTSSEATSSGKSIDYGFIS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AILFLVTGILLVIISYIVPREVTVDPNTVAAREMERLEKESARLGAHLDRCVIAGLCLLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 AILFLVTGILLVIISYIVPREVTVDPNTVAAREMERLEKESARLGAHLDRCVIAGLCLLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LGGVILSCLLMMSMWKGELYRRNRFASSKESAKLYGSFNFRMKTSTNENTLELSLVEEDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LGGVILSCLLMMSMWKGELYRRNRFASSKESAKLYGSFNFRMKTSTNENTLELSLVEEDA
              250       260       270       280       290       300

            
pF1KB7 LAVQS
       :::::
CCDS63 LAVQS
            

>>CCDS13011.1 TMEM74B gene_id:55321|Hs108|chr20           (256 aa)
 initn: 543 init1: 473 opt: 498  Z-score: 562.2  bits: 111.9 E(32554): 5.4e-25
Smith-Waterman score: 514; 45.9% identity (65.7% similar) in 242 aa overlap (78-303:24-246)

        50        60        70        80         90                
pF1KB7 STPRATEMEGSKLSSSPASPSSSLQNSTLQPDAFPPGL-LHSGNNQITAERK--------
                                     : : :::: :.. .:   : :.        
CCDS13        MPPAQGYEFAAAKGPRDELGPSFPMASPPGLELKTLSNGPQAPRRSAPLGPVA
                      10        20        30        40        50   

           100         110       120       130       140       150 
pF1KB7 -----VCNCC--SQELETSFTYVDKNINLEQRNRSSPSAKGHNHPGELGWENPNEWSQEA
            : : :  :.: :: :    .: . . :  ::::      :: ..   :   ::. 
CCDS13 PTREGVENACFSSEEHETHF----QNPG-NTRLGSSPSP-----PGGVS-SLPR--SQRD
            60        70             80             90          100

             160       170       180       190       200       210 
pF1KB7 AISLISEEEDDTSSEATSSGKSIDYGFISAILFLVTGILLVIISYIVPREVTVDPNTVAA
        .:: :::    . : .:  . .::::.::..:::.:::::. .: .:::. :.:.::.:
CCDS13 DLSLHSEE--GPALEPVS--RPVDYGFVSALVFLVSGILLVVTAYAIPREARVNPDTVTA
                110         120       130       140       150      

             220       230       240       250       260       270 
pF1KB7 REMERLEKESARLGAHLDRCVIAGLCLLTLGGVILSCLLMMSMWKGELYRRNRFASSKES
       :::::::   ::::.:::::.:::: :::.::..:: :::.:. :::::::  :. .: :
CCDS13 REMERLEMYYARLGSHLDRCIIAGLGLLTVGGMLLSVLLMVSLCKGELYRRRTFVPGKGS
        160       170       180       190       200       210      

             280       290       300             
pF1KB7 AKLYGSFNFRMKTSTNENTLELSLVEEDALAVQS        
        : :::.:.::.  ....    .:::.... :          
CCDS13 RKTYGSINLRMRQLNGDGGQ--ALVENEVVQVSETSHTLQRS
        220       230         240       250      




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 04:57:34 2016 done: Fri Nov  4 04:57:34 2016
 Total Scan time:  2.860 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]