Result of FASTA (ccds) for
pF1KB7184
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7184, 221 aa
1>>>pF1KB7184 221 - 221 aa - 221 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4651+/-0.000724; mu= 12.4916+/- 0.044
mean_var=61.3416+/-12.185, 0's: 0 Z-trim(109.1): 21 B-trim: 5 in 1/51
Lambda= 0.163756
statistics sampled from 10633 (10648) to 10633 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.327), width: 16
Scan time: 2.180
The best scores are: opt bits E(32554)
CCDS4652.1 GPX5 gene_id:2880|Hs108|chr6 ( 221) 1517 366.5 7.5e-102
CCDS43389.1 GPX3 gene_id:2878|Hs108|chr5 ( 226) 1082 263.7 6.6e-71
CCDS43432.1 GPX6 gene_id:257202|Hs108|chr6 ( 221) 1046 255.2 2.4e-68
CCDS43091.1 GPX1 gene_id:2876|Hs108|chr3 ( 203) 597 149.1 1.9e-36
CCDS4653.1 GPX5 gene_id:2880|Hs108|chr6 ( 100) 545 136.7 5e-33
CCDS41964.1 GPX2 gene_id:2877|Hs108|chr14 ( 190) 540 135.7 2e-32
CCDS569.1 GPX7 gene_id:2882|Hs108|chr1 ( 187) 283 74.9 3.7e-14
>>CCDS4652.1 GPX5 gene_id:2880|Hs108|chr6 (221 aa)
initn: 1517 init1: 1517 opt: 1517 Z-score: 1942.0 bits: 366.5 E(32554): 7.5e-102
Smith-Waterman score: 1517; 100.0% identity (100.0% similar) in 221 aa overlap (1-221:1-221)
10 20 30 40 50 60
pF1KB7 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR
130 140 150 160 170 180
190 200 210 220
pF1KB7 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
:::::::::::::::::::::::::::::::::::::::::
CCDS46 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
190 200 210 220
>>CCDS43389.1 GPX3 gene_id:2878|Hs108|chr5 (226 aa)
initn: 1077 init1: 1077 opt: 1082 Z-score: 1386.4 bits: 263.7 E(32554): 6.6e-71
Smith-Waterman score: 1082; 70.5% identity (87.1% similar) in 217 aa overlap (1-217:1-217)
10 20 30 40 50 60
pF1KB7 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
:. :.. :: :::: ::. : ::: ::::: .::::.: :.... .::. ::::.
CCDS43 MARLLQASCLLSLLLAGFVSQSRGQEKSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
::..::::::.:::::.:: ::::::::: :.:::.::::::::::::::.:.:::: ::
CCDS43 GKYVLFVNVASYCGLTGQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENSEILPTLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR
::::::::::.:::::::::::::::: ..:::.::: ::.::: . :.:.::::::
CCDS43 YVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIR
130 140 150 160 170 180
190 200 210 220
pF1KB7 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
::::::::::::::.::: ::.:::.:: :::.:...
CCDS43 WNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYMRRQAALGVKRK
190 200 210 220
>>CCDS43432.1 GPX6 gene_id:257202|Hs108|chr6 (221 aa)
initn: 1028 init1: 1008 opt: 1046 Z-score: 1340.6 bits: 255.2 E(32554): 2.4e-68
Smith-Waterman score: 1046; 67.3% identity (88.2% similar) in 220 aa overlap (1-220:1-220)
10 20 30 40 50 60
pF1KB7 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
: :... :. ..:. :.: . : .. :.::.: ::::.: :..:: .::..:::..
CCDS43 MFQQFQASCLVLFFLVGFAQQTLKPQNRKVDCNKGVTGTIYEYGALTLNGEEYIQFKQFA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
:::.::::::.::::.:::::::::::::: .:..::.:::::::::::: :.::: :::
CCDS43 GKHVLFVNVAAYCGLAAQYPELNALQEELKNFGVIVLAFPCNQFGKQEPGTNSEILLGLK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR
:: ::.:::::::::::::::::::::::.:::.::: :..::. ... :.:.::::::
CCDS43 YVCPGSGFVPSFQLFEKGDVNGEKEQKVFTFLKNSCPPTSDLLGSSSQLFWEPMKVHDIR
130 140 150 160 170 180
190 200 210 220
pF1KB7 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
::::::::::::.:::.: :.: ::.::.::: :::::.:
CCDS43 WNFEKFLVGPDGVPVMHWFHQAPVSTVKSDILEYLKQFNTH
190 200 210 220
>>CCDS43091.1 GPX1 gene_id:2876|Hs108|chr3 (203 aa)
initn: 561 init1: 350 opt: 597 Z-score: 767.9 bits: 149.1 E(32554): 1.9e-36
Smith-Waterman score: 597; 50.0% identity (73.9% similar) in 184 aa overlap (39-217:15-198)
10 20 30 40 50 60
pF1KB7 HLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVN
..: . : : .: ::. . :: .:. :
CCDS43 MCAARLAAAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIEN
10 20 30 40
70 80 90 100 110 120
pF1KB7 VATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGG
::. :: :.. : ..: ::..: : :::::::::::::.:: . :.::: .:::::::::
CCDS43 VASLCGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 FVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSE----ILGTFKSISWDPVKVHDIRWNF
: :.:.:::: .::: . .:.::... : ::. .. : :.:.:: .:. :::
CCDS43 FEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNF
110 120 130 140 150 160
190 200 210 220
pF1KB7 EKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
:::::::::.:. :.:.: . ... :: : :.:
CCDS43 EKFLVGPDGVPLRRYSRRFQTIDIEPDIEALLSQGPSCA
170 180 190 200
>>CCDS4653.1 GPX5 gene_id:2880|Hs108|chr6 (100 aa)
initn: 560 init1: 545 opt: 545 Z-score: 706.5 bits: 136.7 E(32554): 5e-33
Smith-Waterman score: 545; 92.1% identity (96.6% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KB7 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MTTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GKHILFVNVATYCGLTAQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
:::::::::::::::::::: ... :.:
CCDS46 GKHILFVNVATYCGLTAQYPGMSVQGEDLYLVSSFLRKGM
70 80 90 100
>>CCDS41964.1 GPX2 gene_id:2877|Hs108|chr14 (190 aa)
initn: 482 init1: 313 opt: 540 Z-score: 695.6 bits: 135.7 E(32554): 2e-32
Smith-Waterman score: 540; 46.4% identity (72.1% similar) in 183 aa overlap (39-216:7-187)
10 20 30 40 50 60
pF1KB7 HLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVN
..:: ::.:. .: :.:. . :. .:. :
CCDS41 MAFIAKSFYDLSAISLD-GEKVDFNTFRGRAVLIEN
10 20 30
70 80 90 100 110 120
pF1KB7 VATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGG
::. :: :.. . .:: :: .. : ::::::::::::.:: .:.::: .:::::::::
CCDS41 VASLCGTTTRDFTQLNELQCRF-PRRLVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 FVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSE----ILGTFKSISWDPVKVHDIRWNF
. :.: : .: .:::..:. ::..:: . :.: . .. : : :.::. :. :::
CCDS41 YQPTFTLVQKCEVNGQNEHPVFAYLKDKLPYPYDDPFSLMTDPKLIIWSPVRRSDVAWNF
100 110 120 130 140 150
190 200 210 220
pF1KB7 EKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
::::.::.: : :.:. . ... :: ::
CCDS41 EKFLIGPEGEPFRRYSRTFPTINIEPDIKRLLKVAI
160 170 180 190
>>CCDS569.1 GPX7 gene_id:2882|Hs108|chr1 (187 aa)
initn: 212 init1: 153 opt: 283 Z-score: 367.6 bits: 74.9 E(32554): 3.7e-14
Smith-Waterman score: 327; 34.6% identity (61.7% similar) in 188 aa overlap (32-218:18-179)
10 20 30 40 50 60
pF1KB7 TTQLRVVHLLPLLLACFVQTSPKQEKMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVG
: ..:. .::..:. . ... ::...: :
CCDS56 MVAATVAAAWLLLWAAACAQQEQD-FYDFKAVNI-RGKLVSLEKYRG
10 20 30 40
70 80 90 100 110 120
pF1KB7 KHILFVNVATYCGLTAQ-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLK
. : ::::. ::.: : : :. ::..: :. . ::.:::::::.::: .:::: .
CCDS56 SVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEI---ES
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 YVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIR
..: . :: .: : :.: . .:..: .. . .:.
CCDS56 FARR--TYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGK-------------EPT------
110 120 130 140
190 200 210 220
pF1KB7 WNFEKFLVGPDGIPVMRWSHRATVSSVKTDILAYLKQFKTK
::: :.::.::: : :. ..: :. .: : ....
CCDS56 WNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVRKLILLKREDL
150 160 170 180
221 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:40:29 2016 done: Fri Nov 4 05:40:30 2016
Total Scan time: 2.180 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]