Result of FASTA (ccds) for pF1KB7188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7188, 462 aa
  1>>>pF1KB7188 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5476+/-0.000786; mu= 12.9695+/- 0.048
 mean_var=109.4977+/-22.179, 0's: 0 Z-trim(111.1): 6  B-trim: 0 in 0/51
 Lambda= 0.122566
 statistics sampled from 12094 (12098) to 12094 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.372), width:  16
 Scan time:  3.490

The best scores are:                                      opt bits E(32554)
CCDS5942.1 SHH gene_id:6469|Hs108|chr7             ( 462) 3084 555.9 3.2e-158
CCDS33380.1 IHH gene_id:3549|Hs108|chr2            ( 411) 1342 247.8 1.5e-65
CCDS8779.1 DHH gene_id:50846|Hs108|chr12           ( 396) 1206 223.8 2.6e-58


>>CCDS5942.1 SHH gene_id:6469|Hs108|chr7                  (462 aa)
 initn: 3084 init1: 3084 opt: 3084  Z-score: 2954.1  bits: 555.9 E(32554): 3.2e-158
Smith-Waterman score: 3084; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KB7 MLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MLLLARCLLLVLVSSLLVCSGLACGPGRGFGKRRHPKKLTPLAYKQFIPNVAEKTLGASG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 RYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWPGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESKAH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 IHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 IHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDFLT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 FLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 FLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGPPSGGALG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 PRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILINRVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 ASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 ASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTAPGA
              370       380       390       400       410       420

              430       440       450       460  
pF1KB7 ADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS59 ADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
              430       440       450       460  

>>CCDS33380.1 IHH gene_id:3549|Hs108|chr2                 (411 aa)
 initn: 1657 init1: 1275 opt: 1342  Z-score: 1290.1  bits: 247.8 E(32554): 1.5e-65
Smith-Waterman score: 1583; 58.9% identity (74.2% similar) in 453 aa overlap (7-458:13-407)

                     10        20        30         40        50   
pF1KB7       MLLLARCLLLVLVSSLLVCSGLACGPGRGFG-KRRHPKKLTPLAYKQFIPNVAE
                   ::.:.:.  :.: .. .:::::  : .:: :.::.::::::: ::: :
CCDS33 MSPARLRPRLHFCLVLLLL--LVVPAAWGCGPGRVVGSRRRPPRKLVPLAYKQFSPNVPE
               10          20        30        40        50        

            60        70        80        90       100       110   
pF1KB7 KTLGASGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISV
       :::::::::::::.:.:::::::::::::::::::::::::::::::::::.::.:::::
CCDS33 KTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISV
       60        70        80        90       100       110        

           120       130       140       150       160       170   
pF1KB7 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV
       ::::::::::::::::::::::::::::::::::::::::::.:::.:::::::::::::
CCDS33 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV
      120       130       140       150       160       170        

           180       190       200       210       220       230   
pF1KB7 YYESKAHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRL
       :::::::.:::::.:.:.:::.:::::..: :.::.:.   .. . :::::::  ..:  
CCDS33 YYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSP
      180       190       200       210       220       230        

           240       250       260       270       280       290   
pF1KB7 LYSDFLTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGP
        .:: : ::::.    ..: ::::..: .:: :: :::::.:   :. : :: :      
CCDS33 TFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTA---DNHT-EPAARF----
      240       250       260       270       280           290    

           300       310       320       330       340       350   
pF1KB7 PSGGALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGT
               :: :::.:.::: : .::   :   : :: : .:. .. : ::::::: .::
CCDS33 --------RATFASHVQPGQYV-LVAGVPG---LQPARVAAVS-THVALGAYAPLTKHGT
                      300        310          320        330       

           360       370       380       390       400       410   
pF1KB7 ILINRVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRV
       .... :.:::.:.. .:  :. :: :.:: :.:                           
CCDS33 LVVEDVVASCFAAVADHHLAQLAFWPLRLFHSL---------------------------
       340       350       360       370                           

           420       430       440       450       460  
pF1KB7 ALTAPGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
          : :.  .::     :.::: ::::..:  ::.  ..:::::.    
CCDS33 ---AWGSW-TPGE----GVHWYPQLLYRLGRLLLEEGSFHPLGMSGAGS
                      380       390       400       410 

>>CCDS8779.1 DHH gene_id:50846|Hs108|chr12                (396 aa)
 initn: 1421 init1: 1126 opt: 1206  Z-score: 1160.4  bits: 223.8 E(32554): 2.6e-58
Smith-Waterman score: 1474; 54.4% identity (72.9% similar) in 450 aa overlap (1-447:1-395)

               10        20         30         40        50        
pF1KB7 MLLLARCLLLVLVSSLLVCSGLACGPGRG-FGKRRHPKK-LTPLAYKQFIPNVAEKTLGA
       : ::.  : :  .. ::.  . .::::::  :.::. .: :.:: ::::.:.: :.::::
CCDS87 MALLTNLLPLCCLA-LLALPAQSCGPGRGPVGRRRYARKQLVPLLYKQFVPGVPERTLGA
               10         20        30        40        50         

       60        70        80        90       100       110        
pF1KB7 SGRYEGKISRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQWP
       ::  ::...:.::::..:.::::::::::::::.:::::::.:::...:::::.:::.::
CCDS87 SGPAEGRVARGSERFRDLVPNYNPDIIFKDEENSGADRLMTERCKERVNALAIAVMNMWP
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB7 GVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYESK
       ::.:::::::::::::...::::::::.:::::::::.:::.:::::::::::::::::.
CCDS87 GVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESR
     120       130       140       150       160       170         

      180       190       200       210       220       230        
pF1KB7 AHIHCSVKAENSVAAKSGGCFPGSATVHLEQGGTKLVKDLSPGDRVLAADDQGRLLYSDF
        :.: ::::.::.:...::::::.:::.: .:  : ...:  :: ::::: .::.. .  
CCDS87 NHVHVSVKADNSLAVRAGGCFPGNATVRLWSGERKGLRELHRGDWVLAADASGRVVPTPV
     180       190       200       210       220       230         

      240       250       260       270       280       290        
pF1KB7 LTFLDRDDGAKKVFYVIETREPRERLLLTAAHLLFVAPHNDSATGEPEASSGSGP-PSGG
       : :::::   .  : ..::. : ..::::  ::.:.:                :: :. :
CCDS87 LLFLDRDLQRRASFVAVETEWPPRKLLLTPWHLVFAA---------------RGPAPAPG
     240       250       260       270                      280    

       300       310       320       330       340       350       
pF1KB7 ALGPRALFASRVRPGQRVYVVAERDGDRRLLPAAVHSVTLSEEAAGAYAPLTAQGTILIN
        ..:  .:: :.: :. : .     :   : :: :  :.  :::.:..:::::.::.:.:
CCDS87 DFAP--VFARRLRAGDSVLA----PGGDALRPARVARVA-REEAVGVFAPLTAHGTLLVN
            290       300           310        320       330       

       360       370       380       390       400       410       
pF1KB7 RVLASCYAVIEEHSWAHRAFAPFRLAHALLAALAPARTDRGGDSGGGDRGGGGGRVALTA
        ::::::::.: :.::::::::.:: ::: : :                           
CCDS87 DVLASCYAVLESHQWAHRAFAPLRLLHALGALL---------------------------
       340       350       360       370                           

       420       430       440       450       460  
pF1KB7 PGAADAPGAGATAGIHWYSQLLYQIGTWLLDSEALHPLGMAVKSS
       ::.:  :     .:.::::.:::...  ::               
CCDS87 PGGAVQP-----TGMHWYSRLLYRLAEELLG              
                   380       390                    




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:43:45 2016 done: Fri Nov  4 05:43:45 2016
 Total Scan time:  3.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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