FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7189, 131 aa
  1>>>pF1KB7189 131 - 131 aa - 131 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8049+/-0.000236; mu= 15.7968+/- 0.015
 mean_var=83.2003+/-16.462, 0's: 0 Z-trim(124.2): 4  B-trim: 199 in 1/53
 Lambda= 0.140609
 statistics sampled from 45520 (45524) to 45520 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.534), width:  16
 Scan time:  5.910

The best scores are:                                      opt bits E(85289)
NP_001515 (OMIM: 161400,602358) orexin precursor [ ( 131)  891 188.6 2.5e-48


>>NP_001515 (OMIM: 161400,602358) orexin precursor [Homo  (131 aa)
 initn: 891 init1: 891 opt: 891  Z-score: 988.7  bits: 188.6 E(85289): 2.5e-48
Smith-Waterman score: 891; 100.0% identity (100.0% similar) in 131 aa overlap (1-131:1-131)

               10        20        30        40        50        60
pF1KB7 MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNLPSTKVSWAAVTLLLLLLLLPPALLSSGAAAQPLPDCCRQKTCSCRLYELLHGAGNHA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AGILTLGKRRSGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCLGRRCSAPAA
               70        80        90       100       110       120

              130 
pF1KB7 ASVAPGGQSGI
       :::::::::::
NP_001 ASVAPGGQSGI
              130 




131 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:45:04 2016 done: Fri Nov  4 05:45:04 2016
 Total Scan time:  5.910 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]