Result of FASTA (omim) for
pF1KB7202
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7202, 241 aa
1>>>pF1KB7202 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8569+/-0.000264; mu= 13.8230+/- 0.017
mean_var=105.8079+/-21.428, 0's: 0 Z-trim(122.6): 17 B-trim: 2155 in 1/53
Lambda= 0.124685
statistics sampled from 41016 (41035) to 41016 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.808), E-opt: 0.2 (0.481), width: 16
Scan time: 8.010
The best scores are: opt bits E(85289)
NP_612116 (OMIM: 606520) protein G6b isoform G6b-B ( 241) 1669 309.7 3e-84
XP_011513222 (OMIM: 606520) PREDICTED: protein G6b ( 257) 1540 286.5 3e-77
NP_612121 (OMIM: 606520) protein G6b isoform G6b-G ( 222) 1277 239.1 4.7e-63
NP_079536 (OMIM: 606520) protein G6b isoform G6b-A ( 237) 1277 239.2 5e-63
XP_011513223 (OMIM: 606520) PREDICTED: protein G6b ( 253) 1148 216.0 5e-56
NP_612117 (OMIM: 606520) protein G6b isoform G6b-C ( 217) 965 183.0 3.7e-46
XP_016866820 (OMIM: 606520) PREDICTED: protein G6b ( 246) 965 183.0 4e-46
NP_612118 (OMIM: 606520) protein G6b isoform G6b-D ( 193) 959 181.9 7.1e-46
NP_612119 (OMIM: 606520) protein G6b isoform G6b-E ( 197) 956 181.3 1e-45
XP_016866822 (OMIM: 606520) PREDICTED: protein G6b ( 169) 836 159.7 2.9e-39
XP_016866821 (OMIM: 606520) PREDICTED: protein G6b ( 233) 836 159.8 3.7e-39
XP_016866819 (OMIM: 606520) PREDICTED: protein G6b ( 262) 836 159.9 4.1e-39
>>NP_612116 (OMIM: 606520) protein G6b isoform G6b-B pre (241 aa)
initn: 1669 init1: 1669 opt: 1669 Z-score: 1633.6 bits: 309.7 E(85289): 3e-84
Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 241 aa overlap (1-241:1-241)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
190 200 210 220 230 240
pF1KB7 V
:
NP_612 V
>>XP_011513222 (OMIM: 606520) PREDICTED: protein G6b iso (257 aa)
initn: 1540 init1: 1540 opt: 1540 Z-score: 1507.8 bits: 286.5 E(85289): 3e-77
Smith-Waterman score: 1540; 100.0% identity (100.0% similar) in 221 aa overlap (21-241:37-257)
10 20 30 40 50
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSF
::::::::::::::::::::::::::::::
XP_011 EGGTPSFLLQLIQGLGRQDLVTQGPRVEEPASLDGRPGDRVNLSCGGVSHPIRWVWAPSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PACKGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PACKGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 RHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 PQPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PQPIRPLPRFAPLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADP
190 200 210 220 230 240
240
pF1KB7 ADASTIYAVVV
:::::::::::
XP_011 ADASTIYAVVV
250
>>NP_612121 (OMIM: 606520) protein G6b isoform G6b-G pre (222 aa)
initn: 1277 init1: 1277 opt: 1277 Z-score: 1253.0 bits: 239.1 E(85289): 4.7e-63
Smith-Waterman score: 1277; 100.0% identity (100.0% similar) in 181 aa overlap (1-181:1-181)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
:
NP_612 ALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTGKGMGMGRG
190 200 210 220
>>NP_079536 (OMIM: 606520) protein G6b isoform G6b-A pre (237 aa)
initn: 1277 init1: 1277 opt: 1277 Z-score: 1252.6 bits: 239.2 E(85289): 5e-63
Smith-Waterman score: 1280; 86.7% identity (90.4% similar) in 218 aa overlap (1-209:1-217)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 A---PLVKT------EPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPA
: : .: : .. . .. . :: ::.:
NP_079 ALSPPHSSTCENRAPEASKGGRAQDSRGPGP-GTEPALCGSGPSSPQQAPPAVHSGPC
190 200 210 220 230
240
pF1KB7 DASTIYAVVV
>>XP_011513223 (OMIM: 606520) PREDICTED: protein G6b iso (253 aa)
initn: 1148 init1: 1148 opt: 1148 Z-score: 1126.8 bits: 216.0 E(85289): 5e-56
Smith-Waterman score: 1151; 85.4% identity (89.4% similar) in 198 aa overlap (21-209:37-233)
10 20 30 40 50
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSF
::::::::::::::::::::::::::::::
XP_011 EGGTPSFLLQLIQGLGRQDLVTQGPRVEEPASLDGRPGDRVNLSCGGVSHPIRWVWAPSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PACKGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PACKGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 RHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLP
130 140 150 160 170 180
180 190 200 210 220
pF1KB7 PQPIRPLPRFA---PLVKT------EPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSR
::::::::::: : .: : .. . .. . :: ::.:
XP_011 PQPIRPLPRFALSPPHSSTCENRAPEASKGGRAQDSRGPGP-GTEPALCGSGPSSPQQAP
190 200 210 220 230 240
230 240
pF1KB7 PRRLSTADPADASTIYAVVV
XP_011 PAVHSGPC
250
>>NP_612117 (OMIM: 606520) protein G6b isoform G6b-C pre (217 aa)
initn: 1377 init1: 965 opt: 965 Z-score: 949.8 bits: 183.0 E(85289): 3.7e-46
Smith-Waterman score: 1305; 84.6% identity (87.1% similar) in 241 aa overlap (1-241:1-217)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
:::::::::::::::::. :. . .: : : : :..
NP_612 HVLGDRTYCKAPGPTHGAC-PRNRFD----------HSLDL-------LCP------PHI
130 140 150
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
160 170 180 190 200 210
pF1KB7 V
:
NP_612 V
>>XP_016866820 (OMIM: 606520) PREDICTED: protein G6b iso (246 aa)
initn: 965 init1: 965 opt: 965 Z-score: 949.1 bits: 183.0 E(85289): 4e-46
Smith-Waterman score: 965; 99.3% identity (100.0% similar) in 138 aa overlap (1-138:1-138)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
:::::::::::::::::.
XP_016 HVLGDRTYCKAPGPTHGACPRNRFDHSLDLVRLIPPHFLSPTCPLPTPQFLSLSPCWEQT
130 140 150 160 170 180
>>NP_612118 (OMIM: 606520) protein G6b isoform G6b-D pre (193 aa)
initn: 956 init1: 956 opt: 959 Z-score: 944.6 bits: 181.9 E(85289): 7.1e-46
Smith-Waterman score: 959; 96.5% identity (97.9% similar) in 142 aa overlap (1-142:1-142)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::. :.
NP_612 HVLGDRTYCKAPGPTHALSPPHSSTCENRAPEASKGGRAQDSRGPGPGTEPALCGSGPSS
130 140 150 160 170 180
>>NP_612119 (OMIM: 606520) protein G6b isoform G6b-E pre (197 aa)
initn: 956 init1: 956 opt: 956 Z-score: 941.6 bits: 181.3 E(85289): 1e-45
Smith-Waterman score: 1255; 81.7% identity (81.7% similar) in 241 aa overlap (1-241:1-197)
10 20 30 40 50 60
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSFPACKGLSKGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 RPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPPQPIRPLPRF
::::::::::::::::
NP_612 HVLGDRTYCKAPGPTH--------------------------------------------
130
190 200 210 220 230 240
pF1KB7 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_612 APLVKTEPQRPVKEEEPKIPGDLDQEPSLLYADLDHLALSRPRRLSTADPADASTIYAVV
140 150 160 170 180 190
pF1KB7 V
:
NP_612 V
>>XP_016866822 (OMIM: 606520) PREDICTED: protein G6b iso (169 aa)
initn: 836 init1: 836 opt: 836 Z-score: 825.8 bits: 159.7 E(85289): 2.9e-39
Smith-Waterman score: 836; 99.2% identity (100.0% similar) in 118 aa overlap (21-138:37-154)
10 20 30 40 50
pF1KB7 MAVFLQLLPLLLSRAQGNPGASLDGRPGDRVNLSCGGVSHPIRWVWAPSF
::::::::::::::::::::::::::::::
XP_016 EGGTPSFLLQLIQGLGRQDLVTQGPRVEEPASLDGRPGDRVNLSCGGVSHPIRWVWAPSF
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 PACKGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PACKGLSKGRRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 RHEDESRTVLHVLGDRTYCKAPGPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLP
:::::::::::::::::::::::::::.
XP_016 RHEDESRTVLHVLGDRTYCKAPGPTHGACPRNRFDHSLDLLHL
130 140 150 160
241 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 05:54:39 2016 done: Fri Nov 4 05:54:41 2016
Total Scan time: 8.010 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]