FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7209, 201 aa
  1>>>pF1KB7209 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0343+/-0.000703; mu= 15.8308+/- 0.042
 mean_var=74.5171+/-14.832, 0's: 0 Z-trim(110.6): 25  B-trim: 0 in 0/52
 Lambda= 0.148575
 statistics sampled from 11722 (11739) to 11722 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.361), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS34400.1 LY6G5B gene_id:58496|Hs108|chr6        ( 201) 1406 309.9 6.9e-85


>>CCDS34400.1 LY6G5B gene_id:58496|Hs108|chr6             (201 aa)
 initn: 1406 init1: 1406 opt: 1406  Z-score: 1637.4  bits: 309.9 E(32554): 6.9e-85
Smith-Waterman score: 1406; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB7 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL
              130       140       150       160       170       180

              190       200 
pF1KB7 FLNSSGLLVLPQAGLLTPHPS
       :::::::::::::::::::::
CCDS34 FLNSSGLLVLPQAGLLTPHPS
              190       200 




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:59:35 2016 done: Fri Nov  4 05:59:35 2016
 Total Scan time:  2.010 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]