FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7209, 201 aa
  1>>>pF1KB7209 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1206+/-0.000315; mu= 15.3268+/- 0.020
 mean_var=78.0761+/-15.989, 0's: 0 Z-trim(117.4): 19  B-trim: 0 in 0/52
 Lambda= 0.145149
 statistics sampled from 29406 (29424) to 29406 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.345), width:  16
 Scan time:  5.550

The best scores are:                                      opt bits E(85289)
NP_067044 (OMIM: 610433) lymphocyte antigen 6 comp ( 201) 1406 303.2 1.8e-82
NP_079538 (OMIM: 610434) lymphocyte antigen 6 comp ( 150)  166 43.4 0.00022


>>NP_067044 (OMIM: 610433) lymphocyte antigen 6 complex   (201 aa)
 initn: 1406 init1: 1406 opt: 1406  Z-score: 1601.4  bits: 303.2 E(85289): 1.8e-82
Smith-Waterman score: 1406; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB7 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MKVHMLVGVLVMVGFTVGKVPVPDIRTCHFCLVEDPSVGCISGSEKCTISSSSLCMVITI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 YYDVKVRFIVRGCGQYISYRCQEKRNTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 DRPLALPLSDSQIQWFYQALNLSLPLPNFHAGTEPDGLDPMVTLSLNLGLSFAELRRMYL
              130       140       150       160       170       180

              190       200 
pF1KB7 FLNSSGLLVLPQAGLLTPHPS
       :::::::::::::::::::::
NP_067 FLNSSGLLVLPQAGLLTPHPS
              190       200 

>>NP_079538 (OMIM: 610434) lymphocyte antigen 6 complex   (150 aa)
 initn: 124 init1:  85 opt: 166  Z-score: 199.8  bits: 43.4 E(85289): 0.00022
Smith-Waterman score: 173; 28.6% identity (52.9% similar) in 119 aa overlap (5-111:28-143)

                                      10         20                
pF1KB7                        MKVHMLVGVLVMVGFTVGK-VPV----------PDIR
                                  .:. ::::.... :: :::          :   
NP_079 MRFMAGPAGSQSLGPLCFHSSPQALYTVLLIVLVMMSLVFGKFVPVNWEPPQPLPFPKYL
               10        20        30        40        50        60

         30        40        50        60        70         80     
pF1KB7 TCHFCLVEDPSVGCISGSEKCTISSSSLCMVITIYYDVKVRFIVRGC-GQYISYRCQEKR
        :. ::.:   .::. ::. :   ..: :...    .     .:  : ..     :.. :
NP_079 RCYRCLLETKELGCLLGSDICLTPAGSSCITLHKKNSSGSDVMVSDCRSKEQMSDCSNTR
               70        80        90       100       110       120

          90       100       110       120       130       140     
pF1KB7 NTYFAEYWYQAQCCQYDYCNSWSSPQLQSSLPEPHDRPLALPLSDSQIQWFYQALNLSLP
       ..  . .:  .: :  :.::.   ::                                  
NP_079 TSPVSGFWIFSQYCFLDFCND---PQNRGLYTP                           
              130       140          150                           




201 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 05:59:35 2016 done: Fri Nov  4 05:59:36 2016
 Total Scan time:  5.550 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]