FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7235, 635 aa
  1>>>pF1KB7235 635 - 635 aa - 635 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2195+/-0.000797; mu= 15.7478+/- 0.048
 mean_var=103.4953+/-20.020, 0's: 0 Z-trim(111.3): 37  B-trim: 6 in 1/50
 Lambda= 0.126071
 statistics sampled from 12208 (12241) to 12208 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.376), width:  16
 Scan time:  4.100

The best scores are:                                      opt bits E(32554)
CCDS483.1 MPL gene_id:4352|Hs108|chr1              ( 635) 4494 828.1       0


>>CCDS483.1 MPL gene_id:4352|Hs108|chr1                   (635 aa)
 initn: 4494 init1: 4494 opt: 4494  Z-score: 4420.2  bits: 828.1 E(32554):    0
Smith-Waterman score: 4494; 100.0% identity (100.0% similar) in 635 aa overlap (1-635:1-635)

               10        20        30        40        50        60
pF1KB7 MPSWALFMVTSCLLLAPQNLAQVSSQDVSLLASDSEPLKCFSRTFEDLTCFWDEEEAAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MPSWALFMVTSCLLLAPQNLAQVSSQDVSLLASDSEPLKCFSRTFEDLTCFWDEEEAAPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GTYQLLYAYPREKPRACPLSSQSMPHFGTRYVCQFPDQEEVRLFFPLHLWVKNVFLNQTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GTYQLLYAYPREKPRACPLSSQSMPHFGTRYVCQFPDQEEVRLFFPLHLWVKNVFLNQTR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TQRVLFVDSVGLPAPPSIIKAMGGSQPGELQISWEEPAPEISDFLRYELRYGPRDPKNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TQRVLFVDSVGLPAPPSIIKAMGGSQPGELQISWEEPAPEISDFLRYELRYGPRDPKNST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 GPTVIQLIATETCCPALQRPHSASALDQSPCAQPTMPWQDGPKQTSPSREASALTAEGGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GPTVIQLIATETCCPALQRPHSASALDQSPCAQPTMPWQDGPKQTSPSREASALTAEGGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 CLISGLQPGNSYWLQLRSEPDGISLGGSWGSWSLPVTVDLPGDAVALGLQCFTLDLKNVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CLISGLQPGNSYWLQLRSEPDGISLGGSWGSWSLPVTVDLPGDAVALGLQCFTLDLKNVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 CQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSRCHFKSRNDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 CQWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSRCHFKSRNDS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 IIHILVEVTTAPGTVHSYLGSPFWIHQAVRLPTPNLHWREISSGHLELEWQHPSSWAAQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 IIHILVEVTTAPGTVHSYLGSPFWIHQAVRLPTPNLHWREISSGHLELEWQHPSSWAAQE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 TCYQLRYTGEGHQDWKVLEPPLGARGGTLELRPRSRYRLQLRARLNGPTYQGPWSSWSDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TCYQLRYTGEGHQDWKVLEPPLGARGGTLELRPRSRYRLQLRARLNGPTYQGPWSSWSDP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 TRVETATETAWISLVTALHLVLGLSAVLGLLLLRWQFPAHYRRLRHALWPSLPDLHRVLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 TRVETATETAWISLVTALHLVLGLSAVLGLLLLRWQFPAHYRRLRHALWPSLPDLHRVLG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 QYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLPLCSSQAQMDYRRLQPSCLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QYLRDTAALSPPKATVSDTCEEVEPSLLEILPKSSERTPLPLCSSQAQMDYRRLQPSCLG
              550       560       570       580       590       600

              610       620       630     
pF1KB7 TMPLSVCPPMAESGSCCTTHIANHSYLPLSYWQQP
       :::::::::::::::::::::::::::::::::::
CCDS48 TMPLSVCPPMAESGSCCTTHIANHSYLPLSYWQQP
              610       620       630     




635 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:10:40 2016 done: Fri Nov  4 06:10:41 2016
 Total Scan time:  4.100 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]