Result of FASTA (omim) for
pF1KB7238
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7238, 118 aa
1>>>pF1KB7238 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9829+/-0.000271; mu= 1.3928+/- 0.017
mean_var=214.9973+/-41.884, 0's: 0 Z-trim(127.0): 36 B-trim: 52 in 1/57
Lambda= 0.087470
statistics sampled from 54343 (54384) to 54343 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.873), E-opt: 0.2 (0.638), width: 16
Scan time: 5.110
The best scores are: opt bits E(85289)
NP_848131 (OMIM: 612608) late cornified envelope p ( 118) 988 134.9 2.8e-32
NP_848130 (OMIM: 612607) late cornified envelope p ( 118) 934 128.1 3.2e-30
NP_848128 (OMIM: 612605) late cornified envelope p ( 118) 928 127.4 5.4e-30
NP_848126 (OMIM: 612604) late cornified envelope p ( 118) 901 124.0 5.7e-29
NP_848129 (OMIM: 612606) late cornified envelope p ( 114) 848 117.3 5.8e-27
NP_848125 (OMIM: 612603) late cornified envelope p ( 110) 835 115.6 1.8e-26
NP_848517 (OMIM: 612612) late cornified envelope p ( 110) 648 92.0 2.2e-19
NP_848525 (OMIM: 612619) late cornified envelope p ( 118) 640 91.0 4.7e-19
NP_055172 (OMIM: 612610) late cornified envelope p ( 110) 630 89.7 1.1e-18
NP_848515 (OMIM: 612609) late cornified envelope p ( 106) 627 89.3 1.4e-18
NP_848516 (OMIM: 612611) late cornified envelope p ( 110) 626 89.2 1.5e-18
NP_001263260 (OMIM: 612605) late cornified envelop ( 88) 544 78.8 1.7e-15
XP_011507023 (OMIM: 612618) PREDICTED: late cornif ( 175) 514 75.3 3.8e-14
NP_848133 (OMIM: 612618) late cornified envelope p ( 99) 412 62.2 1.9e-10
NP_848520 (OMIM: 612614) late cornified envelope p ( 95) 310 49.3 1.4e-06
NP_848521 (OMIM: 612615) late cornified envelope p ( 94) 297 47.6 4.3e-06
NP_115952 (OMIM: 612616) late cornified envelope p ( 92) 293 47.1 6e-06
NP_848522 (OMIM: 612617) late cornified envelope p ( 92) 288 46.5 9.3e-06
XP_011507786 (OMIM: 612617) PREDICTED: late cornif ( 92) 288 46.5 9.3e-06
NP_848518 (OMIM: 612613) late cornified envelope p ( 89) 231 39.3 0.0013
NP_001017418 (OMIM: 182268) small proline-rich pro ( 72) 225 38.4 0.0019
XP_016857663 (OMIM: 182268) PREDICTED: small proli ( 72) 225 38.4 0.0019
NP_005979 (OMIM: 182267) small proline-rich protei ( 72) 225 38.4 0.0019
NP_005544 (OMIM: 148021) keratin-associated protei ( 169) 227 39.1 0.003
>>NP_848131 (OMIM: 612608) late cornified envelope prote (118 aa)
initn: 988 init1: 988 opt: 988 Z-score: 700.4 bits: 134.9 E(85289): 2.8e-32
Smith-Waterman score: 988; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>NP_848130 (OMIM: 612607) late cornified envelope prote (118 aa)
initn: 934 init1: 934 opt: 934 Z-score: 663.6 bits: 128.1 E(85289): 3.2e-30
Smith-Waterman score: 934; 94.1% identity (99.2% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..:::::::::::::::::..:::::::::::::::::.:::::::::::::::::
NP_848 GSSSGGCCSSGGGGCCLSHHRHHRSHRHRPQSSDCCSQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>NP_848128 (OMIM: 612605) late cornified envelope prote (118 aa)
initn: 928 init1: 928 opt: 928 Z-score: 659.5 bits: 127.4 E(85289): 5.4e-30
Smith-Waterman score: 928; 94.1% identity (97.5% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..:::::::::::::::::::::: :::::: ::::::.:::::::::::::::::
NP_848 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCSQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>NP_848126 (OMIM: 612604) late cornified envelope prote (118 aa)
initn: 901 init1: 901 opt: 901 Z-score: 641.1 bits: 124.0 E(85289): 5.7e-29
Smith-Waterman score: 901; 90.7% identity (95.8% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::.:::::::::: ::::::: ::.:::::::::::::::::::::::::::::: :
NP_848 MSCQQNQQQCQPPPKCIPKCPPKCLTPRCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGSC
10 20 30 40 50 60
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..:::::::::::::::::::::: :::::: ::::::.:::::::::::::::::
NP_848 GSSSGGCCSSGGGGCCLSHHRRRRSHCHRPQSSGCCSQPSGGSSCCGGGSGQHSGGCC
70 80 90 100 110
>>NP_848129 (OMIM: 612606) late cornified envelope prote (114 aa)
initn: 719 init1: 719 opt: 848 Z-score: 605.1 bits: 117.3 E(85289): 5.8e-27
Smith-Waterman score: 848; 88.1% identity (94.9% similar) in 118 aa overlap (1-118:1-114)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::::::::::::::::: ::::.:::::: :::::::::::::::::::::: :
NP_848 MSCQQSQQQCQPPPKCTPKCTPKCPAPKCPPK----CPPVSSCCSVSSGGCCGSSSGGGC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
.:..::::::::::::::::::.::::.::::::::::::.:::::::::.:::::::
NP_848 GSNSGGCCSSGGGGCCLSHHRRHRSHRRRPQSSDCCSQPSGGSSCCGGGSSQHSGGCC
60 70 80 90 100 110
>>NP_848125 (OMIM: 612603) late cornified envelope prote (110 aa)
initn: 786 init1: 571 opt: 835 Z-score: 596.4 bits: 115.6 E(85289): 1.8e-26
Smith-Waterman score: 835; 89.0% identity (90.7% similar) in 118 aa overlap (1-118:1-110)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGG--
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCSQPSAGSSCCGGGSGQHSGGCC
:: ::::::::::::::.:::::: ::: ::::::.::::::: :::::::::
NP_848 -----GC-SSGGGGCCLSHHRRHRSHRHRLQSSGCCSQPSGGSSCCGGDSGQHSGGCC
60 70 80 90 100 110
>>NP_848517 (OMIM: 612612) late cornified envelope prote (110 aa)
initn: 553 init1: 410 opt: 648 Z-score: 468.9 bits: 92.0 E(85289): 2.2e-19
Smith-Waterman score: 648; 67.2% identity (80.7% similar) in 119 aa overlap (1-118:1-110)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::.:::::::::: ::: :::: :::::::::.:: . :: . ..::: :::.::
NP_848 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCPPQCP---APCSPAVSSCCGPSSGSCC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCC-SQPSAGSSCCGGGSGQHSGGCC
. ..::::::::::::::::: : ::.: :: ::: :.::..:.:: . :::::
NP_848 GPSSGGCCSSGGGGCCLSHHRPRLFHRRRHQSPDCCESEPSGASGCC-----HSSGGCC
60 70 80 90 100 110
>>NP_848525 (OMIM: 612619) late cornified envelope prote (118 aa)
initn: 398 init1: 398 opt: 640 Z-score: 463.1 bits: 91.0 E(85289): 4.7e-19
Smith-Waterman score: 640; 69.3% identity (77.2% similar) in 127 aa overlap (1-118:1-118)
10 20 30 40 50
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGC
:::::::::::::::::::::::: :::::::::::::: :. : ..:::::::::
NP_848 MSCQQSQQQCQPPPKCTPKCPPKC-TPKCPPKCPPKCPPQCSAPCPPPVSSCCGSSSGGC
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 CSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCS----QPSAGSSCC--GGGSG--
::: :: :::::::: :.: :.:::::.::. : :.::::: .::::
NP_848 CSSEGG--------GCCLSHHRPRQSLRRRPQSSSCCGSGSGQQSGGSSCCHSSGGSGCC
60 70 80 90 100 110
pF1KB7 QHSGGCC
. :::::
NP_848 HSSGGCC
>>NP_055172 (OMIM: 612610) late cornified envelope prote (110 aa)
initn: 532 init1: 399 opt: 630 Z-score: 456.6 bits: 89.7 E(85289): 1.1e-18
Smith-Waterman score: 630; 65.5% identity (79.0% similar) in 119 aa overlap (1-118:1-110)
10 20 30 40 50 60
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPPVSSCCSVSSGGCCGSSSGGCC
:::::.:::::::::: ::: :::: ::::::: :.:: . :: . ..::: :::::
NP_055 MSCQQNQQQCQPPPKCPPKCTPKCP-PKCPPKCLPQCP---APCSPAVSSCCGPISGGCC
10 20 30 40 50
70 80 90 100 110
pF1KB7 SSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCC-SQPSAGSSCCGGGSGQHSGGCC
. ..::::.::.::::::::: : ::.: :: ::: :.::.::.:: . :::::
NP_055 GPSSGGCCNSGAGGCCLSHHRPRLFHRRRHQSPDCCESEPSGGSGCC-----HSSGGCC
60 70 80 90 100 110
>>NP_848515 (OMIM: 612609) late cornified envelope prote (106 aa)
initn: 456 init1: 456 opt: 627 Z-score: 454.8 bits: 89.3 E(85289): 1.4e-18
Smith-Waterman score: 645; 70.0% identity (75.8% similar) in 120 aa overlap (1-118:1-106)
10 20 30 40 50
pF1KB7 MSCQQSQQQCQPPPKCTPKCPPKCPTPKCPPKCPPKCPP-VSSCCSVSSGGCCGSSSGGC
:::::.:::::::::: :::::::: ::: :.:: ::: :::::. :::::::::::::
NP_848 MSCQQNQQQCQPPPKCPPKCPPKCP-PKCRPQCPAPCPPPVSSCCGPSSGGCCGSSSGGC
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 CSSGGGGCCSSGGGGCCLSHHRRRRSHRHRPQSSDCCS-QPSAGSSCCGGGSGQHSGGCC
:::::: :::::::: : :::: :: ::: .::.::.:: . :: ::
NP_848 CSSGGG--------GCCLSHHRPRLFHRHRHQSPDCCECEPSGGSGCC-----HSSGDCC
60 70 80 90 100
118 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:13:06 2016 done: Fri Nov 4 06:13:07 2016
Total Scan time: 5.110 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]