Result of FASTA (ccds) for
pF1KB7261
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7261, 196 aa
1>>>pF1KB7261 196 - 196 aa - 196 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8552+/-0.000692; mu= 16.4989+/- 0.042
mean_var=71.4929+/-14.019, 0's: 0 Z-trim(110.2): 34 B-trim: 46 in 1/51
Lambda= 0.151685
statistics sampled from 11433 (11467) to 11433 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.352), width: 16
Scan time: 2.150
The best scores are: opt bits E(32554)
CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7 ( 196) 1313 295.7 1.2e-80
CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7 ( 211) 1293 291.3 2.7e-79
CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22 ( 241) 500 117.8 5.2e-27
CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22 ( 226) 471 111.5 4e-25
>>CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7 (196 aa)
initn: 1313 init1: 1313 opt: 1313 Z-score: 1561.2 bits: 295.7 E(32554): 1.2e-80
Smith-Waterman score: 1313; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
130 140 150 160 170 180
190
pF1KB7 TTSLNPDYREEDTDVR
::::::::::::::::
CCDS47 TTSLNPDYREEDTDVR
190
>>CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7 (211 aa)
initn: 1293 init1: 1293 opt: 1293 Z-score: 1537.1 bits: 291.3 E(32554): 2.7e-79
Smith-Waterman score: 1293; 100.0% identity (100.0% similar) in 193 aa overlap (1-193:1-193)
10 20 30 40 50 60
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSLRAHGVHATKHVPEKRPLPIRRKRSIEEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA
130 140 150 160 170 180
190
pF1KB7 TTSLNPDYREEDTDVR
:::::::::::::
CCDS34 TTSLNPDYREEDTGRPRESGKKRKRKRLKPT
190 200 210
>>CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22 (241 aa)
initn: 519 init1: 395 opt: 500 Z-score: 598.5 bits: 117.8 E(32554): 5.2e-27
Smith-Waterman score: 500; 46.4% identity (68.3% similar) in 183 aa overlap (7-183:7-184)
10 20 30 40 50
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDS--
:.: : :: : :: ::.:. : :. .:.:. ::::::. : : ::.
CCDS13 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAE
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 LDTSL-RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTS
:: .. :.:. . . . : : :. : ::. ::::: ..:: : .: :.
CCDS13 LDLNMTRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 ANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEH
::::.:::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:
CCDS13 ANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDH
120 130 140 150 160 170
180 190
pF1KB7 LECACATTSLNPDYREEDTDVR
: : : :..
CCDS13 LACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTAL
180 190 200 210 220 230
>>CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22 (226 aa)
initn: 504 init1: 395 opt: 471 Z-score: 564.5 bits: 111.5 E(32554): 4e-25
Smith-Waterman score: 471; 46.7% identity (70.3% similar) in 165 aa overlap (25-183:10-169)
10 20 30 40 50
pF1KB7 MRTLACLLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDS--
::.:. : :. .:.:. ::::::. : : ::.
CCDS33 MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAE
10 20 30 40
60 70 80 90 100 110
pF1KB7 LDTSL-RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTS
:: .. :.:. . . . : : :. : ::. ::::: ..:: : .: :.
CCDS33 LDLNMTRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTN
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 ANFLIWPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEH
::::.:::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:
CCDS33 ANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDH
110 120 130 140 150 160
180 190
pF1KB7 LECACATTSLNPDYREEDTDVR
: : : :..
CCDS33 LACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTAL
170 180 190 200 210 220
196 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:26:06 2016 done: Fri Nov 4 06:26:06 2016
Total Scan time: 2.150 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]