Result of FASTA (ccds) for
pF1KB7274
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7274, 745 aa
1>>>pF1KB7274 745 - 745 aa - 745 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6606+/-0.00111; mu= -5.3490+/- 0.066
mean_var=232.8262+/-47.450, 0's: 0 Z-trim(110.0): 17 B-trim: 4 in 1/51
Lambda= 0.084054
statistics sampled from 11278 (11285) to 11278 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.347), width: 16
Scan time: 2.560
The best scores are: opt bits E(32554)
CCDS9946.1 PAPOLA gene_id:10914|Hs108|chr14 ( 745) 4839 600.3 3.4e-171
CCDS78202.1 PAPOLB gene_id:56903|Hs108|chr7 ( 637) 3527 441.2 2.3e-123
CCDS1863.1 PAPOLG gene_id:64895|Hs108|chr2 ( 736) 2817 355.1 2.2e-97
CCDS58334.1 PAPOLA gene_id:10914|Hs108|chr14 ( 285) 1847 237.4 2.4e-62
CCDS58335.1 PAPOLA gene_id:10914|Hs108|chr14 ( 238) 1343 176.2 5.1e-44
>>CCDS9946.1 PAPOLA gene_id:10914|Hs108|chr14 (745 aa)
initn: 4839 init1: 4839 opt: 4839 Z-score: 3186.9 bits: 600.3 E(32554): 3.4e-171
Smith-Waterman score: 4839; 100.0% identity (100.0% similar) in 745 aa overlap (1-745:1-745)
10 20 30 40 50 60
pF1KB7 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 LFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 MKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 ATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTAT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 QPAISPPPKPTVSRVVSSTRLVNPPPRSSGNAATSGNAATKIPTPIVGVKRTSSPHKEES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QPAISPPPKPTVSRVVSSTRLVNPPPRSSGNAATSGNAATKIPTPIVGVKRTSSPHKEES
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 PKKTKTEEDETSEDANCLALSGHDKTEAKEQLDTETSTTQSETIQTAASLLASQKTSSTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 PKKTKTEEDETSEDANCLALSGHDKTEAKEQLDTETSTTQSETIQTAASLLASQKTSSTD
670 680 690 700 710 720
730 740
pF1KB7 LSDIPALPANPIPVIKNSIKLRLNR
:::::::::::::::::::::::::
CCDS99 LSDIPALPANPIPVIKNSIKLRLNR
730 740
>>CCDS78202.1 PAPOLB gene_id:56903|Hs108|chr7 (637 aa)
initn: 3533 init1: 3253 opt: 3527 Z-score: 2328.1 bits: 441.2 E(32554): 2.3e-123
Smith-Waterman score: 3527; 86.1% identity (93.6% similar) in 625 aa overlap (1-625:2-624)
10 20 30 40 50
pF1KB7 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQ
::::::::: : :: ..::..::::::.::::::.:::.:::::.::::::::::::
CCDS78 MMPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 RRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCV
::::.: :::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS78 RRILVLEKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 APRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIP
:: :::::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS78 APSHVDRSDFFTSFYAKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 EDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSN
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS78 EDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB7 ILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPV
::::::::::::::::::::::::.:::::.:::::::.::::::::::.::: ::::::
CCDS78 ILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB7 WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWS
:::::::::::::::::::::::::::::::.::::::.:::::::::: ::::::::::
CCDS78 WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB7 KLFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
::::::.::::::::::::::: ::::.::::::::::::::::::::::::::::::::
CCDS78 KLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB7 SFPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEV
:::::::::: ::::::::::: .:: .::: ::.:::::::::::::::::.::::::.
CCDS78 SFPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB7 DMKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPT
:::.:::..::.::::::.:::: :: ::::: .:: :::::.::: .::::::: :
CCDS78 GMKITAMHLRRKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAGCENSMSVPSST
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB7 SATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTA
:. ::.:: :: :::::::: :: .:::.:::::: :. :::..:::: . .::::...
CCDS78 STMKTGPLISS--SQGRNSPALAVMTASVANIQATEFSLQQVNTNESSGVALNESIPHAV
550 560 570 580 590
600 610 620 630 640 650
pF1KB7 TQPAISPPPKPTVSRVVSSTRLVNPPPRSSGNAATSGNAATKIPTPIVGVKRTSSPHKEE
.:::::: :: :.:::::: :.. :
CCDS78 SQPAISPSPKAMVARVVSSTCLISHPDLQETQQQTYLIL
600 610 620 630
>>CCDS1863.1 PAPOLG gene_id:64895|Hs108|chr2 (736 aa)
initn: 2784 init1: 2669 opt: 2817 Z-score: 1861.8 bits: 355.1 E(32554): 2.2e-97
Smith-Waterman score: 2844; 61.2% identity (78.8% similar) in 747 aa overlap (13-745:12-736)
10 20 30 40 50 60
pF1KB7 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
.: :::::::::::::.::: : . :::::...:::::::.::::..
CCDS18 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNH
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
:...:::::::::::: ..::::::: ::. .::::::::::::::::::::::::::::
CCDS18 RLVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
::::.::::: ::..::: :. ...:::::.:::::::. :::::::..:::::.::: .
CCDS18 PRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
.::::::: :..:::::::::::::::::::::::: ..:::::::.::::::..::::.
CCDS18 NLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVW
::::::::::::::::::::::: :::::::::::::::::::::::::::: :::::::
CCDS18 LGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVW
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSK
::::::::::::::::::::::::::::::.::: :::::::::::.::::: .:..:::
CCDS18 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSK
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 LFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
:.: :::::::.::::: ::: ::...::::::::::::.:::.::.:::::::::::::
CCDS18 LLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQS
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB7 FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVD
::. ::. ... .:: .:..:...::.:....::::::::::::::::: : .:..
CCDS18 FPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEG
420 430 440 450 460 470
490 500 510 520 530
pF1KB7 MKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGV---------KLTALNDSSLDLSMDSDN
::: : :::.::::. :: ..::::::.: : : .:..: :: : :.::
CCDS18 MKIEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSRDTDN
480 490 500 510 520 530
540 550 560 570 580
pF1KB7 SMSVPSPTSATKTSPLNSSGSSQGRNS--PAPAVTAASVTNIQATEVSVPQVNSSESSGG
. ::.: . :: : : .. ::: :: ... .. : .:.: . :
CCDS18 GTPFNSPASKSD-SP--SVGETE-RNSAEPAAVIVEKPLSVPPAQGLSIPVI-------G
540 550 560 570 580
590 600 610 620 630 640
pF1KB7 TSSESIPQTATQPAISPPPKPTVSRVVSSTRLVNPPPRSSGNAATSG-NAATKIPTPIVG
.. .: .:.. :.. : .:.: : :...: ..:. .: . :: ::
CCDS18 AKVDSTVKTVSPPTVCTIPT-VVGRNVIP-RITTPHNPAQGQPHLNGMSNITKTVTP---
590 600 610 620 630 640
650 660 670 680 690 700
pF1KB7 VKRTSSPHKEESPKKTKTEEDETSEDANCLALSGHDKTEAKEQLDTETSTTQSETIQTAA
::. :: . .::. : : : . .: :.:. ... .:.. .
CCDS18 -KRSHSPSIDGTPKRLKDVEKFIR-----LESTFKDPRTAEERKRKSVDAIGGESMPIPT
650 660 670 680 690
710 720 730 740
pF1KB7 SLLASQKT-SSTDLSDIPA-LPANPIPVIKNSIKLRLNR
. .: : .: : . .::: : ::::::.: :::
CCDS18 IDTSRKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR
700 710 720 730
>>CCDS58334.1 PAPOLA gene_id:10914|Hs108|chr14 (285 aa)
initn: 1847 init1: 1847 opt: 1847 Z-score: 1232.7 bits: 237.4 E(32554): 2.4e-62
Smith-Waterman score: 1847; 100.0% identity (100.0% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KB7 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVW
:::::::::::::::::::::::::::::::::::::::
CCDS58 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWYVFRLY
250 260 270 280
310 320 330 340 350 360
pF1KB7 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSK
>>CCDS58335.1 PAPOLA gene_id:10914|Hs108|chr14 (238 aa)
initn: 1336 init1: 1336 opt: 1343 Z-score: 903.7 bits: 176.2 E(32554): 5.1e-44
Smith-Waterman score: 1343; 90.1% identity (94.8% similar) in 232 aa overlap (1-230:1-231)
10 20 30 40 50 60
pF1KB7 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
190 200 210 220 230
pF1KB7 DLDLRDDSLLKNLDIRCIRSLNGCRVTDE--ILHLVPNIDNFRLTLRAIKLWAKRHNIYS
::::::::::::::::::::::: : .:... .:. : .. ..::.
CCDS58 DLDLRDDSLLKNLDIRCIRSLNGMRKPTSFCVLQFLSDISCFYTSF-VLKLFIAILLTQ
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 NILGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLP
745 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:12:55 2016 done: Sat Nov 5 22:12:55 2016
Total Scan time: 2.560 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]