FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7278, 689 aa
  1>>>pF1KB7278 689 - 689 aa - 689 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7151+/-0.000997; mu= -3.0676+/- 0.060
 mean_var=325.2363+/-68.101, 0's: 0 Z-trim(115.1): 25  B-trim: 0 in 0/52
 Lambda= 0.071117
 statistics sampled from 15618 (15632) to 15618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.48), width:  16
 Scan time:  4.770

The best scores are:                                      opt bits E(32554)
CCDS43243.1 PRDM8 gene_id:56978|Hs108|chr4         ( 689) 4701 496.2 6.6e-140


>>CCDS43243.1 PRDM8 gene_id:56978|Hs108|chr4              (689 aa)
 initn: 4701 init1: 4701 opt: 4701  Z-score: 2625.3  bits: 496.2 E(32554): 6.6e-140
Smith-Waterman score: 4701; 100.0% identity (100.0% similar) in 689 aa overlap (1-689:1-689)

               10        20        30        40        50        60
pF1KB7 MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MEDTGIQRGIWDGDAKAVQQCLTDIFTSVYTTCDIPENAIFGPCVLSHTSLYDSIAFIAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KSTDKRTVPYIFRVDTSAANGSSEGLMWLRLVQSARDKEEQNLEAYIKNGQLFYRSLRRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AKDEELLVWYGKELTELLLLCPSRSHNKMNGSSPYTCLECSQRFQFEFPYVAHLRFRCPK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 RLHSADISPQDEQGGGVGTKDHGGGGGGGKDQQQQQQEAPLGPGPKFCKAGPLHHYPSPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PESSNPSAAAGGSSAKPSTDFHNLARELENSRGGSSCSPAQSLSSGSGSGGGGGHQEAEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SPDGIATGGGKGKRKFPEEAAEGGGGAGLVGGRGRFVERPLPASKEDLVCTPQQYRASGS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YFGLEENGRLFAPPSPETGEAKRSAFVEVKKAARAASLQEEGTADGAGVASEDQDAGGGG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GSSTPAAASPVGAEKLLAPRPGGPLPSRLEGGSPARGSAFTSVPQLGSAGSTSGGGGTGA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GAAGGAGGGQGAASDERKSAFSQPARSFSQLSPLVLGQKLGALEPCHPADGVGPTRLYPA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 AADPLAVKLQGAADLNGGCGSLPSGGGGLPKQSPFLYATAFWPKSSAAAAAAAAAAAAGP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LQLQLPSALTLLPPSFTSLCLPAQNWCAKCNASFRMTSDLVYHMRSHHKKEYAMEPLVKR
              610       620       630       640       650       660

              670       680         
pF1KB7 RREEKLKCPICNESFRERHHLSRHMTSHN
       :::::::::::::::::::::::::::::
CCDS43 RREEKLKCPICNESFRERHHLSRHMTSHN
              670       680         




689 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:28:46 2016 done: Sat Nov  5 08:28:47 2016
 Total Scan time:  4.770 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]