Result of FASTA (ccds) for
pF1KB7334
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7334, 1441 aa
1>>>pF1KB7334 1441 - 1441 aa - 1441 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.4531+/-0.0011; mu= -0.1436+/- 0.066
mean_var=305.7090+/-61.448, 0's: 0 Z-trim(112.0): 78 B-trim: 105 in 1/51
Lambda= 0.073353
statistics sampled from 12798 (12864) to 12798 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.712), E-opt: 0.2 (0.395), width: 16
Scan time: 6.680
The best scores are: opt bits E(32554)
CCDS8253.1 RSF1 gene_id:51773|Hs108|chr11 (1441) 9429 1013.0 0
>>CCDS8253.1 RSF1 gene_id:51773|Hs108|chr11 (1441 aa)
initn: 9429 init1: 9429 opt: 9429 Z-score: 5406.6 bits: 1013.0 E(32554): 0
Smith-Waterman score: 9429; 100.0% identity (100.0% similar) in 1441 aa overlap (1-1441:1-1441)
10 20 30 40 50 60
pF1KB7 MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MATAAAAAAVMAPPGCPGSCPNFAVVCSFLERYGPLLDLPELPFPELERVLQAPPPDVGN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GEVPKELVELHLKLMRKIGKSVTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALLKYLCECQFDDNLKFKNIINEEDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 DDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DDQDGSSWKCIVRNRNELAETLALLKAQIDPVLLKNSSQQDNSSRESPSLEDEETKKEEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TPKQEEQKESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDEKELVKLPVIVKLEKPLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TPKQEEQKESEKMKSEEQPMDLENRSTANVLEETTVKKEKEDEKELVKLPVIVKLEKPLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 ENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSSMEKPVAQEPERIEFGGNIKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSSMEKPVAQEPERIEFGGNIKSS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 HEITEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPVKGPLCKSVTPTKEFLKDEIKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HEITEKSTEETEKLKNDQQAKIPLKKREIKLSDDFDSPVKGPLCKSVTPTKEFLKDEIKQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 EEETCKRISTITALGHEGKQLVNGEVSDERVAPNFKTEPIETKFYETKEESYSPSKDRNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEETCKRISTITALGHEGKQLVNGEVSDERVAPNFKTEPIETKFYETKEESYSPSKDRNI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 ITEGNGTESLNSVITSMKTGELEKETAPLRKDADSSISVLEIHSQKAQIEEPDPPEMETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ITEGNGTESLNSVITSMKTGELEKETAPLRKDADSSISVLEIHSQKAQIEEPDPPEMETS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 LDSSEMAKDLSSKTALSSTESCTMKGEEKSPKTKKDKRPPILECLEKLEKSKKTFLDKDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LDSSEMAKDLSSKTALSSTESCTMKGEEKSPKTKKDKRPPILECLEKLEKSKKTFLDKDA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 QRLSPIPEEVPKSTLESEKPGSPEAAETSPPSNIIDHCEKLASEKEVVECQSTSTVGGQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QRLSPIPEEVPKSTLESEKPGSPEAAETSPPSNIIDHCEKLASEKEVVECQSTSTVGGQS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 VKKVDLETLKEDSEFTKVEMDNLDNAQTSGIEEPSETKGSMQKSKFKYKLVPEEETTASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VKKVDLETLKEDSEFTKVEMDNLDNAQTSGIEEPSETKGSMQKSKFKYKLVPEEETTASE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 NTEITSERQKEGIKLTIRISSRKKKPDSPPKVLEPENKQEKTEKEEEKTNVGRTLRRSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NTEITSERQKEGIKLTIRISSRKKKPDSPPKVLEPENKQEKTEKEEEKTNVGRTLRRSPR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 ISRPTAKVAEIRDQKADKKRGEGEDEVEEESTALQKTDKKEILKKSEKDTNSKVSKVKPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ISRPTAKVAEIRDQKADKKRGEGEDEVEEESTALQKTDKKEILKKSEKDTNSKVSKVKPK
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 GKVRWTGSRTRGRWKYSSNDESEGSGSEKSSAASEEEEEKESEEAILADDDEPCKKCGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GKVRWTGSRTRGRWKYSSNDESEGSGSEKSSAASEEEEEKESEEAILADDDEPCKKCGLP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 NHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKK
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 KERAERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KERAERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCIS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB7 YRFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YRFDEFDEAIDEAIEDDIKEADGGGVGRGKDISTITGHRGKDISTILDEERKENKRPQRA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB7 AAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AAARRKKRRRLNDLDSDSNLDEEESEDEFKISDGSQDEFVVSDENPDESEEDPPSNDDSD
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB7 TDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDFSDDFSDDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TDFCSRRLRRHPSRPMRQSRRLRRKTPKKKYSDDDEEEESEENSRDSESDFSDDFSDDFV
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB7 ETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYLSKNSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ETRRRRSRRNQKRQINYKEDSESDGSQKSLRRGKEIRRVHKRRLSSSESEESYLSKNSED
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB7 DELAKESKRSVRKRGRSTDEYSEADEEEEEEEGKPSRKRLHRIETDEEESCDNAHGDANQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DELAKESKRSVRKRGRSTDEYSEADEEEEEEEGKPSRKRLHRIETDEEESCDNAHGDANQ
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB7 PARDSQPRVLPSEQESTKKPYRIESDEEEDFENVGKVGSPLDYSLVDLPSTNGQSPGKAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PARDSQPRVLPSEQESTKKPYRIESDEEEDFENVGKVGSPLDYSLVDLPSTNGQSPGKAI
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB7 ENLIGKPTEKSQTPKDNSTASASLASNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ENLIGKPTEKSQTPKDNSTASASLASNGTSGGQEAGAPEEEEDELLRVTDLVDYVCNSEQ
1390 1400 1410 1420 1430 1440
pF1KB7 L
:
CCDS82 L
1441 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:46:22 2016 done: Sat Nov 5 08:46:23 2016
Total Scan time: 6.680 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]