FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7340, 1156 aa
  1>>>pF1KB7340 1156 - 1156 aa - 1156 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.6794+/-0.00109; mu= -6.1035+/- 0.066
 mean_var=343.4044+/-71.469, 0's: 0 Z-trim(114.2): 46  B-trim: 519 in 2/52
 Lambda= 0.069210
 statistics sampled from 14709 (14752) to 14709 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.453), width:  16
 Scan time:  6.280

The best scores are:                                      opt bits E(32554)
CCDS10015.1 NPAP1 gene_id:23742|Hs108|chr15        (1156) 7818 795.3       0


>>CCDS10015.1 NPAP1 gene_id:23742|Hs108|chr15             (1156 aa)
 initn: 7818 init1: 7818 opt: 7818  Z-score: 4233.9  bits: 795.3 E(32554):    0
Smith-Waterman score: 7818; 100.0% identity (100.0% similar) in 1156 aa overlap (1-1156:1-1156)

               10        20        30        40        50        60
pF1KB7 MGNLLSKFRPGCRRRPLPGPGRGAPAPLSRDASPPGRAHSVPTPRPFRGLFRRNARRRPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGNLLSKFRPGCRRRPLPGPGRGAPAPLSRDASPPGRAHSVPTPRPFRGLFRRNARRRPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 AASIFVAPKRPCPLPRAAAAPLGVLPAVGWGLAIRKTPMLPARNPPRFGHPSSVRIPPPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AASIFVAPKRPCPLPRAAAAPLGVLPAVGWGLAIRKTPMLPARNPPRFGHPSSVRIPPPS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RMFTLLLPSPREPAVKARKPIPATLLEETEVWAQEGPRRVKKDEDPVQIEGEDDEKRTPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMFTLLLPSPREPAVKARKPIPATLLEETEVWAQEGPRRVKKDEDPVQIEGEDDEKRTPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SSGEASSTSRSQGTQGDVASFRCSPGPLEGNVYHKFSENSMSEKAQASPASSCLEGPAMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SSGEASSTSRSQGTQGDVASFRCSPGPLEGNVYHKFSENSMSEKAQASPASSCLEGPAMP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 STHSQAGCARHLGKPDPDATAPPEPAVGCSLLQQKLAAEVLNEEPPPSSLGLPIPLMSGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STHSQAGCARHLGKPDPDATAPPEPAVGCSLLQQKLAAEVLNEEPPPSSLGLPIPLMSGK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 RMPDEKPFCIPPRSAAPPRAARNRPCKRKMSIPLLLPLPPSLPLLWDRGELPPPAKLPCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RMPDEKPFCIPPRSAAPPRAARNRPCKRKMSIPLLLPLPPSLPLLWDRGELPPPAKLPCL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 SVEGDLHTLEKSPEYKRNSRILEDKTETMTNSSITQPAPSFSQPVQTTDSLPLTTYTSQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVEGDLHTLEKSPEYKRNSRILEDKTETMTNSSITQPAPSFSQPVQTTDSLPLTTYTSQV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 SAPLPIPDLADLATGPLILPIPPLSTTPKMDEKIAFTIPNSPLALPADLVPILGDQSNEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SAPLPIPDLADLATGPLILPIPPLSTTPKMDEKIAFTIPNSPLALPADLVPILGDQSNEK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 GGSYNSVVGAAPLTSDPPTPPSSTPSFKPPVTRESPISMCVDSPPPLSFLTLLPVPSTGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGSYNSVVGAAPLTSDPPTPPSSTPSFKPPVTRESPISMCVDSPPPLSFLTLLPVPSTGT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 SVITSKPMNSTSVISTVTTNASAHLTSQTAVDPEVVNMDTTAPSQVVIFTSSLSSRVSSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVITSKPMNSTSVISTVTTNASAHLTSQTAVDPEVVNMDTTAPSQVVIFTSSLSSRVSSL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB7 PNSQIHCSAEQRHPGKTSVYTSPLPFIFHNTTPSFNQLFGKEATPQPKFEAPDGQPQKAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PNSQIHCSAEQRHPGKTSVYTSPLPFIFHNTTPSFNQLFGKEATPQPKFEAPDGQPQKAS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB7 LPSACVFLSLPIIPPPDTSTLVNSASTASSSKPPIETNAMHTTPPSKAVILQSASVSKKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPSACVFLSLPIIPPPDTSTLVNSASTASSSKPPIETNAMHTTPPSKAVILQSASVSKKY
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB7 LPFYLGLPGSGNTQPSGNTASVQGSTSLPAQSVRAPATASNHPLNPGATPQPKFGAPDGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPFYLGLPGSGNTQPSGNTASVQGSTSLPAQSVRAPATASNHPLNPGATPQPKFGAPDGP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB7 QQKTSLPSAHDFLSLPIMVPPDTSTLVSSASAASLSKPAIDTSDMNTTPPSKTVILQSTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QQKTSLPSAHDFLSLPIMVPPDTSTLVSSASAASLSKPAIDTSDMNTTPPSKTVILQSTF
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB7 VSRKEEYIRFYMGLPGSGNTLHSDSIASAQVSTSFPAQADRRPTTTSSHPLNTGSISHST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSRKEEYIRFYMGLPGSGNTLHSDSIASAQVSTSFPAQADRRPTTTSSHPLNTGSISHST
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB7 LGATDGQQKSDSSFILGNPATPAPVIGLTSPSVQPLSGSIIPPGFAELTSPYTALGTPVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGATDGQQKSDSSFILGNPATPAPVIGLTSPSVQPLSGSIIPPGFAELTSPYTALGTPVN
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB7 AEPVEGHNASAFPNGTAKTSGFRIATGMPGTGDSTLLVGNTIPGPQVIMGPGTPMDGGSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AEPVEGHNASAFPNGTAKTSGFRIATGMPGTGDSTLLVGNTIPGPQVIMGPGTPMDGGSI
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB7 GFSMSAPGPSSTSGELNIGQGQSGTPSTTSVFPFGQAAWDPTGHSMAAAPQGASNIPVFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GFSMSAPGPSSTSGELNIGQGQSGTPSTTSVFPFGQAAWDPTGHSMAAAPQGASNIPVFG
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KB7 YTSAAAYIPGLDPPTQNSCSGMGGDGTRSIVGGPCVPAFQQCILQHTWTERKFYTSSTHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 YTSAAAYIPGLDPPTQNSCSGMGGDGTRSIVGGPCVPAFQQCILQHTWTERKFYTSSTHY
             1090      1100      1110      1120      1130      1140

             1150      
pF1KB7 YGQETYVRRHVCFQLP
       ::::::::::::::::
CCDS10 YGQETYVRRHVCFQLP
             1150      




1156 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:50:04 2016 done: Sat Nov  5 08:50:05 2016
 Total Scan time:  6.280 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]