Result of FASTA (ccds) for
pF1KB7341
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7341, 1844 aa
1>>>pF1KB7341 1844 - 1844 aa - 1844 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9210+/-0.00109; mu= 13.1351+/- 0.066
mean_var=138.7680+/-27.039, 0's: 0 Z-trim(106.9): 29 B-trim: 2 in 1/52
Lambda= 0.108875
statistics sampled from 9253 (9267) to 9253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.285), width: 16
Scan time: 6.830
The best scores are: opt bits E(32554)
CCDS11260.1 ATAD5 gene_id:79915|Hs108|chr17 (1844) 11910 1883.7 0
>>CCDS11260.1 ATAD5 gene_id:79915|Hs108|chr17 (1844 aa)
initn: 11910 init1: 11910 opt: 11910 Z-score: 10108.5 bits: 1883.7 E(32554): 0
Smith-Waterman score: 11910; 100.0% identity (100.0% similar) in 1844 aa overlap (1-1844:1-1844)
10 20 30 40 50 60
pF1KB7 MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MVGVLAMAAAAAPPPVKDCEIEPCKKRKKDDDTSTCKTITKYLSPLGKTRDRVFAPPKPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 NILDYFRKTSPTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NILDYFRKTSPTNEKTQLGKECKIKSPESVPVDSNKDCTTPLEMFSNVEFKKKRKRVNLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HQLNNIKTENEAPIEISSDDSKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HQLNNIKTENEAPIEISSDDSKEDYSLNNDFVESSTSVLRYKKQVEVLAENIQDTKSQPN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 TMTSLQNSKKVNPKQGTTKNDFKKLRKRKCRDVVDLSESLPLAEELNLLKKDGKDTKQME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TMTSLQNSKKVNPKQGTTKNDFKKLRKRKCRDVVDLSESLPLAEELNLLKKDGKDTKQME
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVEEIPDSTMSICVPSETVDEIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NTTSHANSRDNVTEAAQLNDSIITVSYEEFLKSHKENKVEEIPDSTMSICVPSETVDEIV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 KSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFEMENSLSDPEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSGYISESENSEISQQVRFKTVTVLAQVHPIPPKKTGKIPRIFLKQKQFEMENSLSDPEN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 EQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQTVQKRKSNVVIQEEELELAVLEAGSSEAVKPKCTLEERQQFMKAFRQPASDALKNGVK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KSSDKQKDLNEKCLYEVGRDDNSKKIMENSGIQMVSKNGNLQLHTDKGSFLKEKNKKLKK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 KNKKTLDTGAIPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KNKKTLDTGAIPGKNREGNTQKKETTFFLKEKQYQNRMSLRQRKTEFFKSSTLFNNESLV
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 YEDIANDDLLKVSSLCNNNKLSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YEDIANDDLLKVSSLCNNNKLSRKTSIPVKDIKLTQSKAESEASLLNVSTPKSTRRSGRI
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB7 SSTPTTETIRGIDSDDVQDNSQLKASTQKAANLSEKHSLYTAELITVPFDSESPIRMKFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSTPTTETIRGIDSDDVQDNSQLKASTQKAANLSEKHSLYTAELITVPFDSESPIRMKFT
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB7 RISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RISTPKKSKKKSNKRSEKSEATDGGFTSQIRKASNTSKNISKAKQLIEKAKALHISRSKV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB7 TEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKLQCLNDVLGKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TEEIAIPLRRSSRHQTLPERKKLSETEDSVIIIDSSPTALKHPEKNQKKLQCLNDVLGKK
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB7 LNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LNTSTKNVPGKMKVAPLFLVRKAQKAADPVPSFDESSQDTSEKSQDCDVQCKAKRDFLMS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB7 GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GLPDLLKRQIAKKAAALDVYNAVSTSFQRVVHVQQKDDGCCLWHLKPPSCPLLTKFKELN
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB7 TKVIDLSKCGIALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKVIDLSKCGIALGEFSTLNSKLKSGNSAAVFMRTRKEFTEEVRNLLLEEIRWSNPEFSL
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB7 KKYFPLLLKKQIEHQVLSSECHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KKYFPLLLKKQIEHQVLSSECHSKQELEADVSHKETKRKLVEAENSKSKRKKPNEYSKNL
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB7 EKTNRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEKYQPQTASELIGNELAIKKLHSWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EKTNRKSEELSKRNNSSGIKLDSSKDSGTEDMLWTEKYQPQTASELIGNELAIKKLHSWL
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB7 KDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGVGKTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KDWKRRAELEERQNLKGKRDEKHEDFSGGIDFKGSSDDEEESRLCNTVLITGPTGVGKTA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB7 AVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AVYACAQELGFKIFEVNASSQRSGRQILSQLKEATQSHQVDKQGVNSQKPCFFNSYYIGK
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB7 SPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SPKKISSPKKVVTSPRKVPPPSPKSSGPKRALPPKTLANYFKVSPKPKNNEEIGMLLENN
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KB7 KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KGIKNSFEQKQITQTKSTNATNSNVKDVGAEEPSRKNATSLILFEEVDVIFDEDAGFLNA
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KB7 IKTFMATTKRPVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IKTFMATTKRPVILTTSDPTFSLMFDGCFEEIKFSTPSLLNVASYLQMICLTENFRTDVK
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KB7 DFVTLLTANTCDIRKSILYLQFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DFVTLLTANTCDIRKSILYLQFWIRSGGGVLEERPLTLYRGNSRNVQLVCSEHGLDNKIY
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KB7 PKNTKKKRVDLPKCDSGCAETLFGLKNIFSPSEDLFSFLKHKITMKEEWHKFIQLLTEFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PKNTKKKRVDLPKCDSGCAETLFGLKNIFSPSEDLFSFLKHKITMKEEWHKFIQLLTEFQ
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KB7 MRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAATKSMNCLARKHSEREQPLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MRNVDFLYSNLEFILPLPVDTIPETKNFCGPSVTVDASAATKSMNCLARKHSEREQPLKK
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KB7 SQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEESKARDKGNNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SQKKKQKKTLVILDDSDLFDTDLDFPDQSISLSSVSSSSNAEESKTGDEESKARDKGNNP
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KB7 ETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETKKSIPCPPKTTAGKKCSALVSHCLNSLSEFMDNMSFLDALLTDVREQNKYGRNDFSWT
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720 1730 1740
pF1KB7 NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NGKVTSGLCDEFSLESNDGWTSQSSGELKAAAEALSFTKCSSAISKALETLNSCKKLGRD
1690 1700 1710 1720 1730 1740
1750 1760 1770 1780 1790 1800
pF1KB7 PTNDLTFYVSQKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PTNDLTFYVSQKRNNVYFSQSAANLDNAWKRISVIKSVFSSRSLLYVGNRQASIIEYLPT
1750 1760 1770 1780 1790 1800
1810 1820 1830 1840
pF1KB7 LRNICKTEKLKEQGKSKRRFLHYFEGIHLDIPKETVNTLAADFP
::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRNICKTEKLKEQGKSKRRFLHYFEGIHLDIPKETVNTLAADFP
1810 1820 1830 1840
1844 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 08:50:54 2016 done: Sat Nov 5 08:50:55 2016
Total Scan time: 6.830 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]