(Circular) (Six-base) MAPSORT of: pF1KB7350.seq Check: 7834 from: 1 to: 6350 pF1KB7350 6350 bp With 182 enzymes: SgfI * April 24, 2009 13:08 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 805 1018 1405 2173 2791 805 Size: 213 387 768 618 4364 Fragments arranged by size: 4364 768 618 387 213 AccI GT'mk_AC Cuts at: 3388 3388 Size: 6350 Acc65I G'GTAC_C Cuts at: 3366 3366 Size: 6350 AclI AA'CG_TT Cuts at: 6190 6190 Size: 6350 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 726 1777 1899 2181 2974 3247 4175 4607 5354 Size: 1051 122 282 793 273 928 432 747 Cuts at: 5354 5622 726 Size: 268 1454 Fragments arranged by size: 1454 1051 928 793 747 432 282 273 268 122 AfeI AGC'GCT Cuts at: 473 1291 473 Size: 818 5532 AflIII A'CryG_T Cuts at: 1010 3702 4806 5783 1010 Size: 2692 1104 977 1577 Fragments arranged by size: 2692 1577 1104 977 AgeI A'CCGG_T Cuts at: 4738 4738 Size: 6350 AhdI GACnn_n'nnGTC Cuts at: 1803 1803 Size: 6350 AleI CACnn'nnGTG Cuts at: 2893 2893 Size: 6350 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 2381 2595 2381 Size: 214 6136 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2503 2535 2503 Size: 32 6318 AlwNI CAG_nnn'CTG Cuts at: 441 680 774 1335 1538 1629 2697 3655 5222 Size: 239 94 561 203 91 1068 958 1567 Cuts at: 5222 441 Size: 1569 Fragments arranged by size: 1569 1567 1068 958 561 239 203 94 91 ApaI G_GGCC'C Cuts at: 363 2615 363 Size: 2252 4098 ApaLI G'TGCA_C Cuts at: 5120 5120 Size: 6350 ApoI r'AATT_y Cuts at: 633 3354 5703 5959 633 Size: 2721 2349 256 1024 Fragments arranged by size: 2721 2349 1024 256 AseI AT'TA_AT Cuts at: 20 20 Size: 6350 AsiSI GCG_AT'CGC Cuts at: 104 104 Size: 6350 AvaI C'yCGr_G Cuts at: 757 814 3370 757 Size: 57 2556 3737 Fragments arranged by size: 3737 2556 57 BamHI G'GATC_C Cuts at: 818 3375 818 Size: 2557 3793 BanI G'GyrC_C Cuts at: 917 1092 1617 2306 2590 3366 3780 4028 4063 Size: 175 525 689 284 776 414 248 35 Cuts at: 4063 917 Size: 3204 Fragments arranged by size: 3204 776 689 525 414 284 248 175 35 BanII G_rGCy'C Cuts at: 363 931 1222 1755 2615 2819 3364 4394 363 Size: 568 291 533 860 204 545 1030 2319 Fragments arranged by size: 2319 1030 860 568 545 533 291 204 BbeI G_GCGC'C Cuts at: 2594 3784 4032 2594 Size: 1190 248 4912 Fragments arranged by size: 4912 1190 248 BbsI GAAGACnn'nnnn_ Cuts at: 732 2247 3141 732 Size: 1515 894 3941 Fragments arranged by size: 3941 1515 894 BbvCI CC'TCA_GC Cuts at: 558 997 1610 3271 558 Size: 439 613 1661 3637 Fragments arranged by size: 3637 1661 613 439 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1839 1873 1839 Size: 34 6316 BciVI GTATCCnnnnn_n' Cuts at: 4248 5009 6350 4248 Size: 761 1341 4248 Fragments arranged by size: 4248 1341 761 BclI T'GATC_A Cuts at: 3020 3870 3020 Size: 850 5500 BglI GCCn_nnn'nGGC Cuts at: 656 656 Size: 6350 BglII A'GATC_T Cuts at: 2516 3865 5902 2516 Size: 1349 2037 2964 Fragments arranged by size: 2964 2037 1349 BlpI GC'TnA_GC Cuts at: 862 1171 1690 3462 862 Size: 309 519 1772 3750 Fragments arranged by size: 3750 1772 519 309 Bme1580I G_kGCm'C Cuts at: 363 1097 1894 2615 2788 3334 3975 4068 5124 Size: 734 797 721 173 546 641 93 1056 Cuts at: 5124 363 Size: 1589 Fragments arranged by size: 1589 1056 797 734 721 641 546 173 93 BmrI ACTGGGnnnn_n' Cuts at: 212 926 1032 2800 3562 3643 3978 6122 212 Size: 714 106 1768 762 81 335 2144 440 Fragments arranged by size: 2144 1768 762 714 440 335 106 81 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 887 1278 1428 3114 4717 887 Size: 391 150 1686 1603 2520 Fragments arranged by size: 2520 1686 1603 391 150 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 434 516 1236 1244 2591 3124 434 Size: 82 720 8 1347 533 3660 Fragments arranged by size: 3660 1347 720 533 82 8 Bpu10I CC'TnA_GC Cuts at: 558 901 997 1610 3271 558 Size: 343 96 613 1661 3637 Fragments arranged by size: 3637 1661 613 343 96 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2414 2813 3526 4405 4897 5195 2414 Size: 399 713 879 492 298 3569 Fragments arranged by size: 3569 879 713 492 399 298 BsaI GGTCTCn'nnnn_ Cuts at: 204 483 1811 1864 2958 6054 204 Size: 279 1328 53 1094 3096 500 Fragments arranged by size: 3096 1328 1094 500 279 53 BsaAI yAC'GTr Cuts at: 1313 1449 1707 3703 1313 Size: 136 258 1996 3960 Fragments arranged by size: 3960 1996 258 136 BsaBI GATnn'nnATC Cuts at: 6 3864 5901 6 Size: 3858 2037 455 Fragments arranged by size: 3858 2037 455 BsaHI Gr'CG_yC Cuts at: 1409 2591 3146 3781 4029 4731 6227 1409 Size: 1182 555 635 248 702 1496 1532 Fragments arranged by size: 1532 1496 1182 702 635 555 248 BsaWI w'CCGG_w Cuts at: 2400 3539 4060 4738 5012 5159 5570 2400 Size: 1139 521 678 274 147 411 3180 Fragments arranged by size: 3180 1139 678 521 411 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 119 149 530 560 817 847 918 948 1485 Size: 30 381 30 257 30 71 30 537 Cuts at: 1485 1515 1966 1996 2503 2533 119 Size: 30 451 30 507 30 3936 Fragments arranged by size: 3936 537 507 451 381 257 71 30 30 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 403 406 1506 1627 3306 403 Size: 3 1100 121 1679 3447 Fragments arranged by size: 3447 1679 1100 121 3 BseYI C'CCAG_C Cuts at: 159 836 1186 2127 2988 3012 3069 3229 3775 Size: 677 350 941 861 24 57 160 546 Cuts at: 3775 4533 5110 5606 159 Size: 758 577 496 903 Fragments arranged by size: 941 903 861 758 677 577 546 496 350 160 57 24 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1524 1524 Size: 6350 BsiEI CG_ry'CG Cuts at: 104 3892 3938 5146 104 Size: 3788 46 1208 1308 Fragments arranged by size: 3788 1308 1208 46 BsiHKAI G_wGCw'C Cuts at: 1421 1696 2771 3364 4142 4332 5124 1421 Size: 275 1075 593 778 190 792 2647 Fragments arranged by size: 2647 1075 792 778 593 275 190 BsiWI C'GTAC_G Cuts at: 1313 1313 Size: 6350 BsmI GAATG_Cn' Cuts at: 2860 3302 2860 Size: 442 5908 BsmBI CGTCTCn'nnnn_ Cuts at: 1008 1008 Size: 6350 Bsp1286I G_dGCh'C Cuts at: 363 931 1097 1222 1421 1696 1755 1894 2615 Size: 568 166 125 199 275 59 139 721 Cuts at: 2615 2771 2788 2819 3334 3364 3975 4068 4142 Size: 156 17 31 515 30 611 93 74 Cuts at: 4142 4332 4394 5124 363 Size: 190 62 730 1589 Fragments arranged by size: 1589 730 721 611 568 515 275 199 190 166 156 139 125 93 74 62 59 31 30 17 BspEI T'CCGG_A Cuts at: 2400 5570 2400 Size: 3170 3180 BspHI T'CATG_A Cuts at: 5526 5526 Size: 6350 BspMI ACCTGCnnnn'nnnn_ Cuts at: 805 1018 1334 1405 2173 2791 3400 3614 3916 Size: 213 316 71 768 618 609 214 302 Cuts at: 3916 4297 805 Size: 381 2858 Fragments arranged by size: 2858 768 618 609 381 316 302 214 213 71 BsrBI CCG'CTC Cuts at: 50 2413 2625 4642 4696 6180 6345 50 Size: 2363 212 2017 54 1484 165 55 Fragments arranged by size: 2363 2017 1484 212 165 55 54 BsrDI GCAATG_nn' Cuts at: 4262 4262 Size: 6350 BsrFI r'CCGG_y Cuts at: 1524 4348 4529 4738 1524 Size: 2824 181 209 3136 Fragments arranged by size: 3136 2824 209 181 BsrGI T'GTAC_A Cuts at: 489 489 Size: 6350 BssSI C'ACGA_G Cuts at: 4621 4979 4621 Size: 358 5992 BstAPI GCAn_nnn'nTGC Cuts at: 1889 3727 1889 Size: 1838 4512 BstBI TT'CG_AA Cuts at: 4711 4711 Size: 6350 BstEII G'GTnAC_C Cuts at: 164 2185 164 Size: 2021 4329 BstXI CCAn_nnnn'nTGG Cuts at: 454 727 1719 1951 3246 454 Size: 273 992 232 1295 3558 Fragments arranged by size: 3558 1295 992 273 232 BstYI r'GATC_y Cuts at: 1 427 818 1625 2516 3266 3375 3842 3865 Size: 426 391 807 891 750 109 467 23 Cuts at: 3865 4200 4446 5458 5544 5556 5902 1 Size: 335 246 1012 86 12 346 449 Fragments arranged by size: 1012 891 807 750 467 449 426 391 346 335 246 109 86 23 12 Bsu36I CC'TnA_GG Cuts at: 913 1403 2842 913 Size: 490 1439 4421 Fragments arranged by size: 4421 1439 490 BtgI C'CryG_G Cuts at: 107 981 1208 2942 3101 3307 107 Size: 874 227 1734 159 206 3150 Fragments arranged by size: 3150 1734 874 227 206 159 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 4300 4481 4644 4300 Size: 181 163 6006 Fragments arranged by size: 6006 181 163 BtsI GCAGTG_nn' Cuts at: 127 2002 2336 2363 3593 127 Size: 1875 334 27 1230 2884 Fragments arranged by size: 2884 1875 1230 334 27 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 706 741 2777 2812 706 Size: 35 2036 35 4244 Fragments arranged by size: 4244 2036 35 35 DraI TTT'AAA Cuts at: 3349 3349 Size: 6350 DrdI GACnn_nn'nnGTC Cuts at: 963 4056 4914 963 Size: 3093 858 2399 Fragments arranged by size: 3093 2399 858 EaeI y'GGCC_r Cuts at: 140 330 984 1443 1709 2321 2567 2666 2909 Size: 190 654 459 266 612 246 99 243 Cuts at: 2909 2945 3077 3935 4109 4500 4527 5872 140 Size: 36 132 858 174 391 27 1345 618 Fragments arranged by size: 1345 858 654 618 612 459 391 266 246 243 190 174 132 99 36 27 EagI C'GGCC_G Cuts at: 3935 3935 Size: 6350 EarI CTCTTCn'nnn_ Cuts at: 155 573 587 2278 4373 4583 155 Size: 418 14 1691 2095 210 1922 Fragments arranged by size: 2095 1922 1691 418 210 14 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 2518 4558 4868 5014 6160 2518 Size: 2040 310 146 1146 2708 Fragments arranged by size: 2708 2040 1146 310 146 EcoICRI GAG'CTC Cuts at: 3362 3362 Size: 6350 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 434 516 726 1236 1244 1777 1899 2181 2591 Size: 82 210 510 8 533 122 282 410 Cuts at: 2591 2974 3124 3247 4175 4607 5354 5622 434 Size: 383 150 123 928 432 747 268 1162 Fragments arranged by size: 1162 928 747 533 510 432 410 383 282 268 210 150 123 122 82 8 EcoNI CCTnn'n_nnAGG Cuts at: 385 1078 2845 385 Size: 693 1767 3890 Fragments arranged by size: 3890 1767 693 EcoO109I rG'GnC_Cy Cuts at: 244 785 1356 1458 1785 2611 2612 2694 2983 Size: 541 571 102 327 826 1 82 289 Cuts at: 2983 3489 244 Size: 506 3105 Fragments arranged by size: 3105 826 571 541 506 327 289 102 82 1 EcoRI G'AATT_C Cuts at: 3354 3354 Size: 6350 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 4369 4369 Size: 6350 FspI TGC'GCA Cuts at: 3202 4131 3202 Size: 929 5421 HaeII r_GCGC'y Cuts at: 475 1293 2422 2461 2594 3003 3784 4032 5054 Size: 818 1129 39 133 409 781 248 1022 Cuts at: 5054 6033 475 Size: 979 792 Fragments arranged by size: 1129 1022 979 818 792 781 409 248 133 39 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 528 560 861 893 918 950 1789 1821 2198 Size: 32 301 32 25 32 839 32 377 Cuts at: 2198 2230 4192 4222 4224 4254 528 Size: 32 1962 30 2 30 2624 Fragments arranged by size: 2624 1962 839 377 301 32 32 32 32 32 30 30 25 2 HincII GTy'rAC Cuts at: 621 3389 621 Size: 2768 3582 HindIII A'AGCT_T Cuts at: 1238 3194 1238 Size: 1956 4394 KasI G'GCGC_C Cuts at: 2590 3780 4028 2590 Size: 1190 248 4912 Fragments arranged by size: 4912 1190 248 KpnI G_GTAC'C Cuts at: 3370 3370 Size: 6350 MluI A'CGCG_T Cuts at: 5783 5783 Size: 6350 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1031 1697 2843 5021 5205 1031 Size: 666 1146 2178 184 2176 Fragments arranged by size: 2178 2176 1146 666 184 MscI TGG'CCA Cuts at: 142 1445 1711 2323 2668 2911 2947 3079 4111 Size: 1303 266 612 345 243 36 132 1032 Cuts at: 4111 142 Size: 2381 Fragments arranged by size: 2381 1303 1032 612 345 266 243 132 36 MslI CAynn'nnrTG Cuts at: 2893 2920 2947 4339 4466 2893 Size: 27 27 1392 127 4777 Fragments arranged by size: 4777 1392 127 27 27 MspA1I CmG'CkG Cuts at: 840 1134 1170 1210 1538 1638 1947 2715 2736 Size: 294 36 40 328 100 309 768 21 Cuts at: 2736 3275 3461 3775 4135 5148 5393 840 Size: 539 186 314 360 1013 245 1797 Fragments arranged by size: 1797 1013 768 539 360 328 314 309 294 245 186 100 40 36 21 NaeI GCC'GGC Cuts at: 4531 4531 Size: 6350 NarI GG'CG_CC Cuts at: 2591 3781 4029 2591 Size: 1190 248 4912 Fragments arranged by size: 4912 1190 248 NcoI C'CATG_G Cuts at: 107 2942 3307 107 Size: 2835 365 3150 Fragments arranged by size: 3150 2835 365 NgoMIV G'CCGG_C Cuts at: 4529 4529 Size: 6350 NspI r_CATG'y Cuts at: 1014 1883 3294 3403 3903 4810 1014 Size: 869 1411 109 500 907 2554 Fragments arranged by size: 2554 1411 907 869 500 109 PasI CC'CwG_GG Cuts at: 215 922 1056 1838 2811 215 Size: 707 134 782 973 3754 Fragments arranged by size: 3754 973 782 707 134 PciI A'CATG_T Cuts at: 1010 4806 1010 Size: 3796 2554 PfoI T'CCnGG_A Cuts at: 440 532 1379 440 Size: 92 847 5411 Fragments arranged by size: 5411 847 92 PmeI GTTT'AAAC Cuts at: 3349 3349 Size: 6350 PmlI CAC'GTG Cuts at: 1449 1449 Size: 6350 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2503 2535 5489 5521 2503 Size: 32 2954 32 3332 Fragments arranged by size: 3332 2954 32 32 PpuMI rG'GwC_Cy Cuts at: 244 785 1356 1785 2983 244 Size: 541 571 429 1198 3611 Fragments arranged by size: 3611 1198 571 541 429 PspOMI G'GGCC_C Cuts at: 359 2611 359 Size: 2252 4098 PstI C_TGCA'G Cuts at: 230 810 845 950 1331 1589 1940 2009 3397 Size: 580 35 105 381 258 351 69 1388 Cuts at: 3397 4082 230 Size: 685 2498 Fragments arranged by size: 2498 1388 685 580 381 351 258 105 69 35 PvuI CG_AT'CG Cuts at: 104 104 Size: 6350 PvuII CAG'CTG Cuts at: 840 1134 1170 1538 1638 1947 2715 2736 3275 Size: 294 36 368 100 309 768 21 539 Cuts at: 3275 3775 4135 840 Size: 500 360 3055 Fragments arranged by size: 3055 768 539 500 368 360 309 294 100 36 21 RsrII CG'GwC_CG Cuts at: 4545 4545 Size: 6350 SacI G_AGCT'C Cuts at: 3364 3364 Size: 6350 SacII CC_GC'GG Cuts at: 1211 1211 Size: 6350 SalI G'TCGA_C Cuts at: 3387 3387 Size: 6350 SanDI GG'GwC_CC Cuts at: 244 785 1356 2983 244 Size: 541 571 1627 3611 Fragments arranged by size: 3611 1627 571 541 SapI GCTCTTCn'nnn_ Cuts at: 4373 4583 4373 Size: 210 6140 SbfI CC_TGCA'GG Cuts at: 3397 3397 Size: 6350 ScaI AGT'ACT Cuts at: 5867 5867 Size: 6350 SexAI A'CCwGG_T Cuts at: 1801 1801 Size: 6350 SfcI C'TryA_G Cuts at: 33 226 806 841 946 1327 1585 1936 1974 Size: 193 580 35 105 381 258 351 38 Cuts at: 1974 2005 3393 4078 5071 5262 33 Size: 31 1388 685 993 191 1121 Fragments arranged by size: 1388 1121 993 685 580 381 351 258 193 191 105 38 35 31 SfoI GGC'GCC Cuts at: 2592 3782 4030 2592 Size: 1190 248 4912 Fragments arranged by size: 4912 1190 248 SgfI GCG_AT'CGC Cuts at: 104 104 Size: 6350 SmaI CCC'GGG Cuts at: 759 816 3372 759 Size: 57 2556 3737 Fragments arranged by size: 3737 2556 57 SmlI C'TyrA_G Cuts at: 2429 2828 3505 4420 4912 5174 2429 Size: 399 677 915 492 262 3605 Fragments arranged by size: 3605 915 677 492 399 262 SpeI A'CTAG_T Cuts at: 67 67 Size: 6350 SphI G_CATG'C Cuts at: 1883 3403 3903 1883 Size: 1520 500 4330 Fragments arranged by size: 4330 1520 500 StuI AGG'CCT Cuts at: 579 579 Size: 6350 StyI C'CwwG_G Cuts at: 107 341 574 1436 1712 2942 3307 3484 3838 Size: 234 233 862 276 1230 365 177 354 Cuts at: 3838 107 Size: 2619 Fragments arranged by size: 2619 1230 862 365 354 276 234 233 177 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 935 2464 3060 3933 4066 4525 4734 935 Size: 1529 596 873 133 459 209 2551 Fragments arranged by size: 2551 1529 873 596 459 209 133 TatI w'GTAC_w Cuts at: 489 1034 2480 5865 489 Size: 545 1446 3385 974 Fragments arranged by size: 3385 1446 974 545 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 119 135 151 167 530 562 1340 1372 1485 Size: 16 16 16 363 32 778 32 113 Cuts at: 1485 1517 5867 5899 119 Size: 32 4350 32 570 Fragments arranged by size: 4350 778 570 363 113 32 32 32 32 16 16 16 Tth111I GACn'n_nGTC Cuts at: 404 1513 1783 4147 404 Size: 1109 270 2364 2607 Fragments arranged by size: 2607 2364 1109 270 XbaI T'CTAG_A Cuts at: 3381 3381 Size: 6350 XcmI CCAnnnn_n'nnnnTGG Cuts at: 512 724 1194 1704 2028 2154 3243 3845 512 Size: 212 470 510 324 126 1089 602 3017 Fragments arranged by size: 3017 1089 602 510 470 324 212 126 XmaI C'CCGG_G Cuts at: 757 814 3370 757 Size: 57 2556 3737 Fragments arranged by size: 3737 2556 57 XmnI GAAnn'nnTTC Cuts at: 3302 3302 Size: 6350 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AfeI AflIII AgeI AhdI AleI AlfI AloI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII KasI KpnI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NgoMIV NspI PasI PciI PfoI PmeI PmlI PpiI PpuMI PspOMI PstI PvuI PvuII RsrII SacI SacII SalI SanDI SapI SbfI ScaI SexAI SfcI SfoI SgfI SmaI SmlI SpeI SphI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XmaI XmnI Enzymes that do not cut: AatII AflII AscI AvrII BaeI BfrBI BmgBI BmtI BssHII BstZ17I ClaI DraIII EcoRV FseI FspAI HpaI MfeI NdeI NheI NotI NruI NsiI PacI PflMI PshAI PsiI PspXI PsrI SfiI SgrAI SnaBI SrfI SspI SwaI XhoI ZraI