Result of FASTA (ccds) for
pF1KB7363
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7363, 362 aa
1>>>pF1KB7363 362 - 362 aa - 362 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.3790+/-0.000966; mu= 9.2269+/- 0.058
mean_var=192.4598+/-40.617, 0's: 0 Z-trim(112.5): 120 B-trim: 776 in 1/50
Lambda= 0.092449
statistics sampled from 13121 (13261) to 13121 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.407), width: 16
Scan time: 2.820
The best scores are: opt bits E(32554)
CCDS9196.1 MSI1 gene_id:4440|Hs108|chr12 ( 362) 2460 340.2 1.7e-93
CCDS11596.1 MSI2 gene_id:124540|Hs108|chr17 ( 328) 1319 188.0 1e-47
CCDS82168.1 MSI2 gene_id:124540|Hs108|chr17 ( 324) 1283 183.2 2.8e-46
CCDS11597.1 MSI2 gene_id:124540|Hs108|chr17 ( 251) 1254 179.2 3.4e-45
CCDS34309.1 HNRNPAB gene_id:3182|Hs108|chr5 ( 332) 564 87.3 2.1e-17
CCDS5397.1 HNRNPA2B1 gene_id:3181|Hs108|chr7 ( 341) 558 86.5 3.7e-17
CCDS43557.1 HNRNPA2B1 gene_id:3181|Hs108|chr7 ( 353) 558 86.5 3.8e-17
CCDS34310.1 HNRNPAB gene_id:3182|Hs108|chr5 ( 285) 556 86.1 3.9e-17
CCDS75153.1 HNRNPDL gene_id:9987|Hs108|chr4 ( 363) 550 85.5 8.1e-17
CCDS3593.1 HNRNPDL gene_id:9987|Hs108|chr4 ( 420) 550 85.5 8.9e-17
CCDS82536.1 HNRNPA3 gene_id:220988|Hs108|chr2 ( 356) 547 85.0 1e-16
CCDS31980.1 HNRNPA1L2 gene_id:144983|Hs108|chr13 ( 320) 546 84.9 1.1e-16
CCDS2273.1 HNRNPA3 gene_id:220988|Hs108|chr2 ( 378) 547 85.1 1.1e-16
CCDS41793.1 HNRNPA1 gene_id:3178|Hs108|chr12 ( 320) 541 84.2 1.7e-16
CCDS3591.1 HNRNPD gene_id:3184|Hs108|chr4 ( 336) 541 84.2 1.8e-16
CCDS44909.1 HNRNPA1 gene_id:3178|Hs108|chr12 ( 372) 541 84.3 1.9e-16
CCDS3592.1 HNRNPD gene_id:3184|Hs108|chr4 ( 355) 537 83.7 2.6e-16
CCDS3590.1 HNRNPD gene_id:3184|Hs108|chr4 ( 306) 523 81.8 8.7e-16
CCDS4193.1 HNRNPA0 gene_id:10949|Hs108|chr5 ( 305) 497 78.3 9.6e-15
>>CCDS9196.1 MSI1 gene_id:4440|Hs108|chr12 (362 aa)
initn: 2460 init1: 2460 opt: 2460 Z-score: 1792.2 bits: 340.2 E(32554): 1.7e-93
Smith-Waterman score: 2460; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
310 320 330 340 350 360
pF1KB7 YH
::
CCDS91 YH
>>CCDS11596.1 MSI2 gene_id:124540|Hs108|chr17 (328 aa)
initn: 1614 init1: 1080 opt: 1319 Z-score: 970.3 bits: 188.0 E(32554): 1e-47
Smith-Waterman score: 1633; 69.7% identity (82.9% similar) in 363 aa overlap (1-362:1-328)
10 20 30 40 50
pF1KB7 METDAPQPGLASP-DSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR
::... : .: :: ::: :::::::::::. ..::.::..:::..::.::::: :::
CCDS11 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVN
::::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.:
CCDS11 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 TTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMV
:.::::::::::::::.::::::::::::::::::::::.::.:::::::::::::::::
CCDS11 TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGY
::::::::::: : :. :::.: .:: :::::::.::::::.: :: .:.: :.::.:
CCDS11 ECKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVATY--GRGYPGFAPSY
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 TYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGS
:::: : : .::::.::::.::: ::.::.:
CCDS11 GYQFPGF-------------------PAAAYGPVAAAAVAAA--RGSGSNP---------
240 250 260
300 310 320 330 340 350
pF1KB7 TPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTN
.: ::: :..::::.:.::: :.:::::..::::::: :..::::...::::::::::
CCDS11 --ARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIATAFTN
270 280 290 300 310 320
360
pF1KB7 GYH
:::
CCDS11 GYH
>>CCDS82168.1 MSI2 gene_id:124540|Hs108|chr17 (324 aa)
initn: 1605 init1: 1037 opt: 1283 Z-score: 944.4 bits: 183.2 E(32554): 2.8e-46
Smith-Waterman score: 1612; 71.4% identity (85.3% similar) in 346 aa overlap (22-362:1-324)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::. ..::.::..:::..::.::::: ::::
CCDS82 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS
10 20 30
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
:::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.::
CCDS82 RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
.::::::::::::::.::::::::::::::::::::::.::.::::::::::::::::::
CCDS82 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
:::::::::: : :. :::.: .:: :::::::.::::::.: :: :. :.: :.::.:
CCDS82 CKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT-YG-RGYPGFAPSYG
160 170 180 190 200 210
250 260 270 280 290
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAA---VVRGTGSHPWTMAP--
:::: : : .::::.::::.::: :. . ...: ::
CCDS82 YQFPGF-------------------PAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPAS
220 230 240 250
300 310 320 330 340 350
pF1KB7 PPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIAT
: ::.:.: ::: :..::::.:.::: :.:::::..::::::: :..::::...::::::
CCDS82 PAGSNPARPGGFPGANSPGPVADLYGPASQDSGVGNYISAASPQPGSGFGHGIAGPLIAT
260 270 280 290 300 310
360
pF1KB7 AFTNGYH
:::::::
CCDS82 AFTNGYH
320
>>CCDS11597.1 MSI2 gene_id:124540|Hs108|chr17 (251 aa)
initn: 1471 init1: 1043 opt: 1254 Z-score: 924.9 bits: 179.2 E(32554): 3.4e-45
Smith-Waterman score: 1254; 81.0% identity (93.4% similar) in 226 aa overlap (21-246:18-240)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
:::::::::::. ..::.::..:::..::.::::: ::::
CCDS11 MADLTSVLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRS
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
:::::::: : :.:::::.: .:::::::::::::::::::::::::::::::::::.::
CCDS11 RGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANT
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
.::::::::::::::.::::::::::::::::::::::.::.::::::::::::::::::
CCDS11 VVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
:::::::::: : :. :::.: .:: :::::::.::::::.: :: :. :.: :.::.:
CCDS11 CKKAQPKEVMFPPGT-RGRARGLPYTMDAFMLGMGMLGYPNFVAT-YG-RGYPGFAPSYG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
::::..
CCDS11 YQFPDYLPVSQDIIFIN
240 250
>>CCDS34309.1 HNRNPAB gene_id:3182|Hs108|chr5 (332 aa)
initn: 611 init1: 322 opt: 564 Z-score: 426.0 bits: 87.3 E(32554): 2.1e-17
Smith-Waterman score: 585; 40.5% identity (64.4% similar) in 247 aa overlap (18-241:68-309)
10 20 30 40
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVK
: :::.:::::.:... :..:: .::::
CCDS34 AGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB7 ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR
.: . :: : :::::::. : : :.:.::: :..:.::...:::: :. . .:
CCDS34 DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB7 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC
.::::::::. ..: : ...:: .::... : .: :..::: :.::. :. :.::
CCDS34 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL
160 170 180 190 200 210
170 180 190 200
pF1KB7 EIHFHEINNKMVECKKAQPKEVMSPT--------------------GSARGRSRVMPYGM
: .:: .... : : ::::::.. :.. :.:. :.
CCDS34 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGY
220 230 240 250 260 270
210 220 230 240 250 260
pF1KB7 DAFM-LGIGML-GY-PGFQATTYASRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTA
. : :. :: ::. . :. .: : .::: :
CCDS34 GNYWNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTNYGKSQRRGGHQNNYKPY
280 290 300 310 320 330
270 280 290 300 310 320
pF1KB7 IPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAAN
>>CCDS5397.1 HNRNPA2B1 gene_id:3181|Hs108|chr7 (341 aa)
initn: 333 init1: 304 opt: 558 Z-score: 421.6 bits: 86.5 E(32554): 3.7e-17
Smith-Waterman score: 558; 40.4% identity (72.9% similar) in 225 aa overlap (21-239:10-232)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
:.::::::..::.:.::.:. :.:.. .:.::::: .:::
CCDS53 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRS
10 20 30 40
70 80 90 100 110
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLSV
:::::::: ..: :: ..: : .:.....:: : :. ..: . .::.::::..
CCDS53 RGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKE
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 NTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKM
.: . ...:::..::.: .. :. ....::::::::...: :.:. ..: ::..
CCDS53 DTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHN
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB7 VECKKAQPKEVMSPTGSAR-GRSRVMPYGMDAFMLGIGMLGY-PG--FQATTYASRSYTG
.: .:: .. :. . :.: ::. . .: :. : : .: :: :.. . . : :
CCDS53 AEVRKALSRQEMQEVQSSRSGRGGNFGFG-DSRG-GGGNFGPGPGSNFRGGSDGYGSGRG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB7 LAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMA
.. ::
CCDS53 FGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGN
230 240 250 260 270 280
>>CCDS43557.1 HNRNPA2B1 gene_id:3181|Hs108|chr7 (353 aa)
initn: 333 init1: 304 opt: 558 Z-score: 421.4 bits: 86.5 E(32554): 3.8e-17
Smith-Waterman score: 558; 40.4% identity (72.9% similar) in 225 aa overlap (21-239:22-244)
10 20 30 40 50
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR
:.::::::..::.:.::.:. :.:.. .:.::::: .::
CCDS43 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 SRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR--AQPKMVTRTKKIFVGGLS
::::::::: ..: :: ..: : .:.....:: : :. ..: . .::.::::..
CCDS43 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 VNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNK
.: . ...:::..::.: .. :. ....::::::::...: :.:. ..: ::..
CCDS43 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 MVECKKAQPKEVMSPTGSAR-GRSRVMPYGMDAFMLGIGMLGY-PG--FQATTYASRSYT
.: .:: .. :. . :.: ::. . .: :. : : .: :: :.. . . :
CCDS43 NAEVRKALSRQEMQEVQSSRSGRGGNFGFG-DSRG-GGGNFGPGPGSNFRGGSDGYGSGR
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 GLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTM
:.. ::
CCDS43 GFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSG
240 250 260 270 280 290
>>CCDS34310.1 HNRNPAB gene_id:3182|Hs108|chr5 (285 aa)
initn: 555 init1: 322 opt: 556 Z-score: 421.1 bits: 86.1 E(32554): 3.9e-17
Smith-Waterman score: 556; 47.3% identity (73.4% similar) in 188 aa overlap (18-201:68-250)
10 20 30 40
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVK
: :::.:::::.:... :..:: .::::
CCDS34 AGAGGATAAPPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVV
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB7 ECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTR
.: . :: : :::::::. : : :.:.::: :..:.::...:::: :. . .:
CCDS34 DCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDP-----
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB7 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC
.::::::::. ..: : ...:: .::... : .: :..::: :.::. :. :.::
CCDS34 VKKIFVGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB7 EIHFHEINNKMVECKKAQPKEVMSPT--GSA-RG-RSRVMPYGMDAFMLGIGMLGYPGFQ
: .:: .... : : ::::::.. ::. :: :.:
CCDS34 EKKFHTVSGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQGSTNYGKS
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB7 ATTYASRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVV
CCDS34 QRRGGHQNNYKPY
280
>>CCDS75153.1 HNRNPDL gene_id:9987|Hs108|chr4 (363 aa)
initn: 559 init1: 321 opt: 550 Z-score: 415.5 bits: 85.5 E(32554): 8.1e-17
Smith-Waterman score: 560; 41.3% identity (64.0% similar) in 242 aa overlap (1-242:129-361)
10 20 30
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQ
.: : . . . .: :::::::::.
CCDS75 AAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB7 TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI
:... : ::...:::: .: . ::.: :::::::: : : :.::::: ..:.::.: :
CCDS75 TSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 DPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHR
::: : ... ::.:::::: .:. :..:.:: ::.... : .: ::..:
CCDS75 DPKRAKALKGKEP----PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB7 GFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAF
:: :.:. .:. :.:. : ..:.:.. : : ::::::. . . .: : :
CCDS75 GFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGR----GAAAG
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB7 MLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAY
: : : : .::.. : : .::
CCDS75 GRG-GTRGRGRGQQSTYGKASRGGGNHQNNYQPY
340 350 360
280 290 300 310 320 330
pF1KB7 GPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVS
>>CCDS3593.1 HNRNPDL gene_id:9987|Hs108|chr4 (420 aa)
initn: 559 init1: 321 opt: 550 Z-score: 414.7 bits: 85.5 E(32554): 8.9e-17
Smith-Waterman score: 563; 38.7% identity (64.8% similar) in 256 aa overlap (1-241:129-379)
10 20 30
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQ
.: : . . . .: :::::::::.
CCDS35 AAAAAATRTARQHPPADSSVTMEDMNEYSNIEEFAEGSKINASKNQQDDGKMFIGGLSWD
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB7 TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTI
:... : ::...:::: .: . ::.: :::::::: : : :.::::: ..:.::.: :
CCDS35 TSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLI
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB7 DPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHR
::: : ... ::.:::::: .:. :..:.:: ::.... : .: ::..:
CCDS35 DPKRAKALKGKEP----PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERR
220 230 240 250 260 270
160 170 180 190
pF1KB7 GFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT---------------GS
:: :.:. .:. :.:. : ..:.:.. : : ::::::. :.
CCDS35 GFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVYRQQQQQQKGGRGAAAGGRGG
280 290 300 310 320 330
200 210 220 230 240 250
pF1KB7 ARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPLPS
.:::.: . . . . . :: ..... ....:.: . :: :
CCDS35 TRGRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYG-GYDYTGYNYGNYGYGQGY
340 350 360 370 380 390
260 270 280 290 300 310
pF1KB7 APVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSPGP
CCDS35 ADYSGQQSTYGKASRGGGNHQNNYQPY
400 410 420
362 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:52:18 2016 done: Fri Nov 4 06:52:19 2016
Total Scan time: 2.820 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]