Result of FASTA (omim) for
pF1KB7363
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7363, 362 aa
1>>>pF1KB7363 362 - 362 aa - 362 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7915+/-0.000367; mu= 12.7915+/- 0.023
mean_var=217.4962+/-49.730, 0's: 0 Z-trim(120.2): 267 B-trim: 3925 in 2/55
Lambda= 0.086966
statistics sampled from 34771 (35148) to 34771 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.412), width: 16
Scan time: 9.070
The best scores are: opt bits E(85289)
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 2460 321.1 2.4e-87
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 2460 321.1 2.4e-87
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 1959 258.3 2e-68
XP_011536666 (OMIM: 603328) PREDICTED: RNA-binding ( 262) 1742 230.9 2.6e-60
XP_011536668 (OMIM: 603328) PREDICTED: RNA-binding ( 259) 1740 230.6 3.1e-60
XP_011536667 (OMIM: 603328) PREDICTED: RNA-binding ( 259) 1740 230.6 3.1e-60
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 1695 225.1 1.8e-58
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 1692 224.7 2.3e-58
XP_011536670 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 1519 202.8 6.2e-52
XP_011536672 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 1519 202.8 6.2e-52
XP_011536673 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 1519 202.8 6.2e-52
XP_006719467 (OMIM: 603328) PREDICTED: RNA-binding ( 224) 1519 202.8 6.2e-52
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 1332 179.6 9.3e-45
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 1331 179.5 1e-44
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 1319 177.9 2.8e-44
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 1298 175.2 1.6e-43
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 1297 175.0 1.6e-43
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 1283 173.4 6.4e-43
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 1254 169.6 6.8e-42
XP_016879638 (OMIM: 607897) PREDICTED: RNA-binding ( 259) 825 115.8 1.1e-25
XP_011522588 (OMIM: 607897) PREDICTED: RNA-binding ( 242) 818 114.9 2e-25
XP_011522589 (OMIM: 607897) PREDICTED: RNA-binding ( 230) 635 91.9 1.5e-18
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 564 83.2 9.2e-16
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 558 82.5 1.6e-15
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 558 82.5 1.6e-15
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 558 82.5 1.6e-15
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 558 82.5 1.6e-15
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 558 82.5 1.6e-15
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 556 82.1 1.7e-15
XP_016879636 (OMIM: 607897) PREDICTED: RNA-binding ( 315) 550 81.4 3e-15
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 550 81.5 3.3e-15
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 550 81.6 3.6e-15
NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 547 81.1 4e-15
NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 547 81.1 4e-15
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 547 81.1 4.2e-15
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 547 81.1 4.2e-15
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 547 81.1 4.4e-15
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 547 81.1 4.4e-15
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 541 80.3 6.7e-15
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 541 80.3 6.9e-15
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 540 80.1 6.9e-15
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 541 80.4 7.3e-15
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 541 80.4 7.3e-15
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 537 79.8 1e-14
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 527 78.5 2.1e-14
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 523 78.0 3.1e-14
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 497 74.7 3e-13
XP_005259588 (OMIM: 607430) PREDICTED: DAZ-associa ( 406) 335 54.6 4.6e-07
XP_011526209 (OMIM: 607430) PREDICTED: DAZ-associa ( 548) 335 54.8 5.5e-07
XP_011526208 (OMIM: 607430) PREDICTED: DAZ-associa ( 549) 335 54.8 5.5e-07
>>XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding pro (362 aa)
initn: 2460 init1: 2460 opt: 2460 Z-score: 1689.2 bits: 321.1 E(85289): 2.4e-87
Smith-Waterman score: 2460; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
310 320 330 340 350 360
pF1KB7 YH
::
XP_011 YH
>>NP_002433 (OMIM: 603328) RNA-binding protein Musashi h (362 aa)
initn: 2460 init1: 2460 opt: 2460 Z-score: 1689.2 bits: 321.1 E(85289): 2.4e-87
Smith-Waterman score: 2460; 100.0% identity (100.0% similar) in 362 aa overlap (1-362:1-362)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
310 320 330 340 350 360
pF1KB7 YH
::
NP_002 YH
>>XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding pro (351 aa)
initn: 2223 init1: 1953 opt: 1959 Z-score: 1349.6 bits: 258.3 E(85289): 2e-68
Smith-Waterman score: 2333; 97.0% identity (97.0% similar) in 362 aa overlap (1-362:1-351)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
:::::::::::::::::::::::::::::::::::::::::::::::: :
XP_006 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGS-----------T
250 260 270 280
310 320 330 340 350 360
pF1KB7 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
290 300 310 320 330 340
pF1KB7 YH
::
XP_006 YH
350
>>XP_011536666 (OMIM: 603328) PREDICTED: RNA-binding pro (262 aa)
initn: 1742 init1: 1742 opt: 1742 Z-score: 1203.8 bits: 230.9 E(85289): 2.6e-60
Smith-Waterman score: 1742; 99.6% identity (100.0% similar) in 260 aa overlap (103-362:3-262)
80 90 100 110 120 130
pF1KB7 GVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQF
.:::::::::::::::::::::::::::::
XP_011 MEQMVTRTKKIFVGGLSVNTTVEDVKQYFEQF
10 20 30
140 150 160 170 180 190
pF1KB7 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSP
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 TGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTP
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB7 LPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTS
160 170 180 190 200 210
320 330 340 350 360
pF1KB7 PGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
220 230 240 250 260
>>XP_011536668 (OMIM: 603328) PREDICTED: RNA-binding pro (259 aa)
initn: 1740 init1: 1740 opt: 1740 Z-score: 1202.5 bits: 230.6 E(85289): 3.1e-60
Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 259 aa overlap (104-362:1-259)
80 90 100 110 120 130
pF1KB7 VDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG
::::::::::::::::::::::::::::::
XP_011 MVTRTKKIFVGGLSVNTTVEDVKQYFEQFG
10 20 30
140 150 160 170 180 190
pF1KB7 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 GSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB7 PSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSP
160 170 180 190 200 210
320 330 340 350 360
pF1KB7 GPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
220 230 240 250
>>XP_011536667 (OMIM: 603328) PREDICTED: RNA-binding pro (259 aa)
initn: 1740 init1: 1740 opt: 1740 Z-score: 1202.5 bits: 230.6 E(85289): 3.1e-60
Smith-Waterman score: 1740; 100.0% identity (100.0% similar) in 259 aa overlap (104-362:1-259)
80 90 100 110 120 130
pF1KB7 VDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFG
::::::::::::::::::::::::::::::
XP_011 MVTRTKKIFVGGLSVNTTVEDVKQYFEQFG
10 20 30
140 150 160 170 180 190
pF1KB7 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKEVMSPT
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB7 GSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYTYQFPEFRVERTPL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB7 PSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGSTPSRTGGFLGTTSP
160 170 180 190 200 210
320 330 340 350 360
pF1KB7 GPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNGYH
220 230 240 250
>>XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding pro (343 aa)
initn: 1695 init1: 1669 opt: 1695 Z-score: 1170.7 bits: 225.1 E(85289): 1.8e-58
Smith-Waterman score: 2287; 94.8% identity (94.8% similar) in 362 aa overlap (1-362:1-343)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
:::: :::::::::::::::::::::::::::::::::::::
XP_011 YQFP-------------------AIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
250 260 270 280
310 320 330 340 350 360
pF1KB7 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
290 300 310 320 330 340
pF1KB7 YH
::
XP_011 YH
>>XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding pro (332 aa)
initn: 2140 init1: 1669 opt: 1692 Z-score: 1168.8 bits: 224.7 E(85289): 2.3e-58
Smith-Waterman score: 2160; 91.7% identity (91.7% similar) in 362 aa overlap (1-362:1-332)
10 20 30 40 50 60
pF1KB7 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 METDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYASRSYTGLAPGYT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 YQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGSHPWTMAPPPGST
:::: ::::::::::::::::::::::::: :
XP_011 YQFP-------------------AIPLTAYGPMAAAAAAAAVVRGTGS-----------T
250 260 270
310 320 330 340 350 360
pF1KB7 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIATAFTNG
280 290 300 310 320 330
pF1KB7 YH
::
XP_011 YH
>>XP_011536670 (OMIM: 603328) PREDICTED: RNA-binding pro (224 aa)
initn: 1519 init1: 1519 opt: 1519 Z-score: 1053.3 bits: 202.8 E(85289): 6.2e-52
Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 224 aa overlap (139-362:1-224)
110 120 130 140 150 160
pF1KB7 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE
::::::::::::::::::::::::::::::
XP_011 MLMFDKTTNRHRGFGFVTFESEDIVEKVCE
10 20 30
170 180 190 200 210 220
pF1KB7 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 SRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGS
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 HPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSL
160 170 180 190 200 210
350 360
pF1KB7 GGPLIATAFTNGYH
::::::::::::::
XP_011 GGPLIATAFTNGYH
220
>>XP_011536672 (OMIM: 603328) PREDICTED: RNA-binding pro (224 aa)
initn: 1519 init1: 1519 opt: 1519 Z-score: 1053.3 bits: 202.8 E(85289): 6.2e-52
Smith-Waterman score: 1519; 100.0% identity (100.0% similar) in 224 aa overlap (139-362:1-224)
110 120 130 140 150 160
pF1KB7 KKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE
::::::::::::::::::::::::::::::
XP_011 MLMFDKTTNRHRGFGFVTFESEDIVEKVCE
10 20 30
170 180 190 200 210 220
pF1KB7 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQATTYA
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB7 SRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SRSYTGLAPGYTYQFPEFRVERTPLPSAPVLPELTAIPLTAYGPMAAAAAAAAVVRGTGS
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB7 HPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HPWTMAPPPGSTPSRTGGFLGTTSPGPMAELYGAANQDSGVSSYISAASPAPSTGFGHSL
160 170 180 190 200 210
350 360
pF1KB7 GGPLIATAFTNGYH
::::::::::::::
XP_011 GGPLIATAFTNGYH
220
362 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:52:19 2016 done: Fri Nov 4 06:52:21 2016
Total Scan time: 9.070 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]