Result of FASTA (ccds) for
pF1KB7365
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7365, 188 aa
1>>>pF1KB7365 188 - 188 aa - 188 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7494+/-0.00072; mu= 12.9649+/- 0.044
mean_var=110.4221+/-22.464, 0's: 0 Z-trim(113.3): 28 B-trim: 675 in 1/52
Lambda= 0.122052
statistics sampled from 13912 (13937) to 13912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.428), width: 16
Scan time: 2.140
The best scores are: opt bits E(32554)
CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX ( 188) 1296 237.8 3e-63
CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX ( 188) 1097 202.7 1.1e-52
CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX ( 188) 1097 202.7 1.1e-52
CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX ( 188) 1088 201.2 3.2e-52
CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX ( 188) 1071 198.2 2.5e-51
CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX ( 188) 1048 194.1 4.2e-50
CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX ( 188) 1048 194.1 4.2e-50
CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX ( 188) 998 185.3 1.9e-47
CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX ( 229) 934 174.1 5.4e-44
CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX ( 223) 883 165.1 2.7e-41
CCDS65267.1 SSX2B gene_id:727837|Hs108|chrX ( 223) 883 165.1 2.7e-41
CCDS43935.1 SSX4B gene_id:548313|Hs108|chrX ( 153) 575 110.7 4.3e-25
CCDS43934.1 SSX4 gene_id:6759|Hs108|chrX ( 153) 575 110.7 4.3e-25
>>CCDS14343.1 SSX7 gene_id:280658|Hs108|chrX (188 aa)
initn: 1296 init1: 1296 opt: 1296 Z-score: 1248.9 bits: 237.8 E(32554): 3e-63
Smith-Waterman score: 1296; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS48129.1 SSX2B gene_id:727837|Hs108|chrX (188 aa)
initn: 1097 init1: 1097 opt: 1097 Z-score: 1059.6 bits: 202.7 E(32554): 1.1e-52
Smith-Waterman score: 1097; 85.6% identity (92.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
CCDS48 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::: : : :.::::.::: :.::::::::::: ::: : ::::::::::::
CCDS48 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
:::. :::::: :::::.:::::::.:::::.. ::::::.:::::::::::::::::::
CCDS48 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS48 SDPEEDDE
>>CCDS14344.2 SSX2 gene_id:6757|Hs108|chrX (188 aa)
initn: 1097 init1: 1097 opt: 1097 Z-score: 1059.6 bits: 202.7 E(32554): 1.1e-52
Smith-Waterman score: 1097; 85.6% identity (92.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::: : : :.::::.::: :.::::::::::: ::: : ::::::::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
:::. :::::: :::::.:::::::.:::::.. ::::::.:::::::::::::::::::
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14291.1 SSX3 gene_id:10214|Hs108|chrX (188 aa)
initn: 1088 init1: 1088 opt: 1088 Z-score: 1051.0 bits: 201.2 E(32554): 3.2e-52
Smith-Waterman score: 1088; 85.1% identity (91.5% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::.::::: .::::::::::.::::::::::.:::::: ::: :::::::::::::
CCDS14 MNGDDTFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKVSEKIVYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::: :: ::.: .::.:::::::: :.::::.:::::: ::: ::::::::::::::
CCDS14 LGFKAILPSFMRNKRVTDFQGNDFDNDPNRGNQVQRPQMTFGRLQGIFPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
: :: :::::: :::::.:::::::.:::::: ::::::.:::::::::::::::::::
CCDS14 NVSKEVPEASGPQNDGKQLCPPGKPTTSEKINMISGPKRGEHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14289.1 SSX5 gene_id:6758|Hs108|chrX (188 aa)
initn: 1071 init1: 1071 opt: 1071 Z-score: 1034.8 bits: 198.2 E(32554): 2.5e-51
Smith-Waterman score: 1071; 83.0% identity (93.6% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::.::::.:.:::::.::.:::::::::.:::::::. ::: :::::::::::::
CCDS14 MNGDDAFVRRPRVGSQIPEKMQKAFDDIAKYFSEKEWEKMKASEKIIYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
:::::::::::.: ..:.:::::::: :.:::::.::::: ::: ::::: :.::::::
CCDS14 LGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKITPEKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::::::::::
CCDS14 NDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
:::.::::
CCDS14 SDPQEDDE
>>CCDS35241.1 SSX4B gene_id:548313|Hs108|chrX (188 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1012.9 bits: 194.1 E(32554): 4.2e-50
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::::::: ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::.::::::.. :.:..:::: ::::. :::::::::: ::::::::::::::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
: : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS35 SDPEEDDE
>>CCDS35240.1 SSX4 gene_id:6759|Hs108|chrX (188 aa)
initn: 1048 init1: 1048 opt: 1048 Z-score: 1012.9 bits: 194.1 E(32554): 4.2e-50
Smith-Waterman score: 1048; 82.4% identity (90.4% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::::::::: ::: ::..:.:::::::::::::::::: ::: ::::: .::.:::
CCDS35 MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::.::::::.. :.:..:::: ::::. :::::::::: ::::::::::::::::
CCDS35 LGFKVTLPPFMRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKIMPKKPAEEE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
: : :::::: :::::.:::::.::: :::::::::::::::::::::::::::.::::
CCDS35 NGLKEVPEASGPQNDGKQLCPPGNPSTLEKINKTSGPKRGKHAWTHRLRERKQLVVYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS35 SDPEEDDE
>>CCDS14290.1 SSX1 gene_id:6756|Hs108|chrX (188 aa)
initn: 998 init1: 998 opt: 998 Z-score: 965.4 bits: 185.3 E(32554): 1.9e-47
Smith-Waterman score: 998; 79.3% identity (88.8% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
:::::.::.::: :. :: .:.::::: :::::::.::: ::::::::::.:.::::
CCDS14 MNGDDTFAKRPRDDAKASEKRSKAFDDIATYFSKKEWKKMKYSEKISYVYMKRNYKAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::.:::::: : :::.::::::::.:. :::.::::: ::.::.::::::::::.
CCDS14 LGFKVTLPPFMCNKQATDFQGNDFDNDHNRRIQVEHPQMTFGRLHRIIPKIMPKKPAEDE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
:::::: :::: :::::.: :::: . :::::: ::::::::::::::::::::::::::
CCDS14 NDSKGVSEASGPQNDGKQLHPPGKANISEKINKRSGPKRGKHAWTHRLRERKQLVIYEEI
130 140 150 160 170 180
pF1KB7 SDPEEDDE
::::::::
CCDS14 SDPEEDDE
>>CCDS14288.1 SSX5 gene_id:6758|Hs108|chrX (229 aa)
initn: 934 init1: 934 opt: 934 Z-score: 903.4 bits: 174.1 E(32554): 5.4e-44
Smith-Waterman score: 934; 82.5% identity (92.8% similar) in 166 aa overlap (23-188:64-229)
10 20 30 40 50
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMK
..:::::::::.:::::::. ::: :::::
CCDS14 IHLVNLSPFWKVGREPASSIKALLCGRGEARAFDDIAKYFSEKEWEKMKASEKIIYVYMK
40 50 60 70 80 90
60 70 80 90 100 110
pF1KB7 RKYEAMTKLGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIM
:::::::::::::::::::.: ..:.:::::::: :.:::::.::::: ::: :::::
CCDS14 RKYEAMTKLGFKATLPPFMRNKRVADFQGNDFDNDPNRGNQVEHPQMTFGRLQGIFPKIT
100 110 120 130 140 150
120 130 140 150 160 170
pF1KB7 PKKPAEEGNDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERK
:.::::::::::::::::: ::.::.: : :: .::::.::::::::::::::::.::::
CCDS14 PEKPAEEGNDSKGVPEASGPQNNGKQLRPSGKLNTSEKVNKTSGPKRGKHAWTHRVRERK
160 170 180 190 200 210
180
pF1KB7 QLVIYEEISDPEEDDE
:::::::::::.::::
CCDS14 QLVIYEEISDPQEDDE
220
>>CCDS14345.2 SSX2 gene_id:6757|Hs108|chrX (223 aa)
initn: 907 init1: 881 opt: 883 Z-score: 855.0 bits: 165.1 E(32554): 2.7e-41
Smith-Waterman score: 883; 78.4% identity (89.2% similar) in 167 aa overlap (1-167:1-167)
10 20 30 40 50 60
pF1KB7 MNGDDAFARRPRAGAQIPEKIQKSFDDIAKYFSKKEWEKMKSLEKISYVYMKRKYEAMTK
::::::::::: .::::::::::.::::::::::.::::::. ::: :::::::::::::
CCDS14 MNGDDAFARRPTVGAQIPEKIQKAFDDIAKYFSKEEWEKMKASEKIFYVYMKRKYEAMTK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LGFKATLPPFMHNTGATDLQGNDFDNDRNQGNQVERPQMTFCRLQRIFPKIMPKKPAEEG
::::::::::: : : :.::::.::: :.::::::::::: ::: : ::::::::::::
CCDS14 LGFKATLPPFMCNKRAEDFQGNDLDNDPNRGNQVERPQMTFGRLQGISPKIMPKKPAEEG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 NDSKGVPEASGSQNDGKHLCPPGKPSTSEKINKTSGPKRGKHAWTHRLRERKQLVIYEEI
:::. :::::: :::::.:::::::.:::::.. :: ..... .:
CCDS14 NDSEEVPEASGPQNDGKELCPPGKPTTSEKIHERSGNREAQEKEERRGTAHRWSSQNTHN
130 140 150 160 170 180
pF1KB7 SDPEEDDE
CCDS14 IGRFSLSTSMGAVHGTPKTITHNRDPKGGNMPGPTDCVRENSW
190 200 210 220
188 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:52:55 2016 done: Fri Nov 4 06:52:55 2016
Total Scan time: 2.140 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]