Result of FASTA (ccds) for
pF1KB7367
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7367, 161 aa
1>>>pF1KB7367 161 - 161 aa - 161 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6950+/-0.000515; mu= 16.2264+/- 0.031
mean_var=67.1947+/-13.344, 0's: 0 Z-trim(114.9): 16 B-trim: 0 in 0/51
Lambda= 0.156461
statistics sampled from 15430 (15440) to 15430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.474), width: 16
Scan time: 2.100
The best scores are: opt bits E(32554)
CCDS32432.1 SLX1A gene_id:548593|Hs108|chr16 ( 161) 1171 271.8 1.2e-73
CCDS10649.1 SLX1B gene_id:79008|Hs108|chr16 ( 161) 1171 271.8 1.2e-73
CCDS32431.1 SLX1A gene_id:548593|Hs108|chr16 ( 275) 609 145.2 2.8e-35
CCDS10648.1 SLX1B gene_id:79008|Hs108|chr16 ( 275) 609 145.2 2.8e-35
>>CCDS32432.1 SLX1A gene_id:548593|Hs108|chr16 (161 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 1435.4 bits: 271.8 E(32554): 1.2e-73
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
70 80 90 100 110 120
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::
CCDS32 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
130 140 150 160
>>CCDS10649.1 SLX1B gene_id:79008|Hs108|chr16 (161 aa)
initn: 1171 init1: 1171 opt: 1171 Z-score: 1435.4 bits: 271.8 E(32554): 1.2e-73
Smith-Waterman score: 1171; 100.0% identity (100.0% similar) in 161 aa overlap (1-161:1-161)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
70 80 90 100 110 120
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::
CCDS10 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
130 140 150 160
>>CCDS32431.1 SLX1A gene_id:548593|Hs108|chr16 (275 aa)
initn: 609 init1: 609 opt: 609 Z-score: 746.8 bits: 145.2 E(32554): 2.8e-35
Smith-Waterman score: 609; 97.6% identity (100.0% similar) in 83 aa overlap (79-161:193-275)
50 60 70 80 90 100
pF1KB7 RKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQ
..::::::::::::::::::::::::::::
CCDS32 PRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQ
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB7 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
230 240 250 260 270
>--
initn: 583 init1: 565 opt: 569 Z-score: 698.0 bits: 136.2 E(32554): 1.5e-32
Smith-Waterman score: 569; 87.9% identity (88.9% similar) in 99 aa overlap (1-99:1-97)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
:::::::::::::::::::: : :: . : :::
CCDS32 GPWEMVLVVHGFPSSVAALR-FEWAWQHPHASRRL-AHVGPRLRGETAFAFHLRVLAHML
70 80 90 100 110
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
CCDS32 RAPPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPD
120 130 140 150 160 170
>>CCDS10648.1 SLX1B gene_id:79008|Hs108|chr16 (275 aa)
initn: 609 init1: 609 opt: 609 Z-score: 746.8 bits: 145.2 E(32554): 2.8e-35
Smith-Waterman score: 609; 97.6% identity (100.0% similar) in 83 aa overlap (79-161:193-275)
50 60 70 80 90 100
pF1KB7 RKKGGAWRTSGRGPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQ
..::::::::::::::::::::::::::::
CCDS10 PRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQ
170 180 190 200 210 220
110 120 130 140 150 160
pF1KB7 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
230 240 250 260 270
>--
initn: 583 init1: 565 opt: 569 Z-score: 698.0 bits: 136.2 E(32554): 1.5e-32
Smith-Waterman score: 569; 87.9% identity (88.9% similar) in 99 aa overlap (1-99:1-97)
10 20 30 40 50 60
pF1KB7 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GPWEMVLVVHGFPSSVAALRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQ
:::::::::::::::::::: : :: . : :::
CCDS10 GPWEMVLVVHGFPSSVAALR-FEWAWQHPHASRRL-AHVGPRLRGETAFAFHLRVLAHML
70 80 90 100 110
130 140 150 160
pF1KB7 CPCCEKSLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
CCDS10 RAPPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPD
120 130 140 150 160 170
161 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:54:01 2016 done: Fri Nov 4 06:54:01 2016
Total Scan time: 2.100 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]