FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7373, 248 aa
  1>>>pF1KB7373 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.7978+/-0.00084; mu= -3.9808+/- 0.051
 mean_var=275.2908+/-55.419, 0's: 0 Z-trim(116.5): 11  B-trim: 2 in 1/52
 Lambda= 0.077300
 statistics sampled from 17109 (17114) to 17109 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.526), width:  16
 Scan time:  1.980

The best scores are:                                      opt bits E(32554)
CCDS43235.1 OPRPN gene_id:58503|Hs108|chr4         ( 248) 1667 198.0   5e-51


>>CCDS43235.1 OPRPN gene_id:58503|Hs108|chr4              (248 aa)
 initn: 1667 init1: 1667 opt: 1667  Z-score: 1029.6  bits: 198.0 E(32554): 5e-51
Smith-Waterman score: 1667; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB7 MKLTFFLGLLALISCFTPSESQRFSRRPYLPGQLPPPPLYRPRWVPPSPPPPYDSRLNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MKLTFFLGLLALISCFTPSESQRFSRRPYLPGQLPPPPLYRPRWVPPSPPPPYDSRLNSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSLPFVPGRVPPSSFSRFSQAVILSQLFPLESIRQPRLFPGYPNLHFPLRPYYVGPIRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LSLPFVPGRVPPSSFSRFSQAVILSQLFPLESIRQPRLFPGYPNLHFPLRPYYVGPIRIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KPPFPPIPFFLAIYLPISNPEPQINITTADTTITTNPPTTATATTSTSTKPTMTISSSTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KPPFPPIPFFLAIYLPISNPEPQINITTADTTITTNPPTTATATTSTSTKPTMTISSSTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PISSTPEPATSISAATPAASTENTTQILANRPHTVLLNATVQVTTSNQTILSSPAFKSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PISSTPEPATSISAATPAASTENTTQILANRPHTVLLNATVQVTTSNQTILSSPAFKSFW
              190       200       210       220       230       240

               
pF1KB7 QKLFAIFG
       ::::::::
CCDS43 QKLFAIFG
               




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:58:18 2016 done: Fri Nov  4 06:58:18 2016
 Total Scan time:  1.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]