FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7373, 248 aa
  1>>>pF1KB7373 248 - 248 aa - 248 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4564+/-0.000338; mu= -7.7800+/- 0.021
 mean_var=313.5951+/-63.490, 0's: 0 Z-trim(124.4): 6  B-trim: 0 in 0/61
 Lambda= 0.072425
 statistics sampled from 45942 (45948) to 45942 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.539), width:  16
 Scan time:  7.480

The best scores are:                                      opt bits E(85289)
NP_067048 (OMIM: 608936) opiorphin prepropeptide i ( 248) 1667 186.6 3.5e-47
NP_006676 (OMIM: 611593) submaxillary gland androg (  79)  268 40.0  0.0015


>>NP_067048 (OMIM: 608936) opiorphin prepropeptide isofo  (248 aa)
 initn: 1667 init1: 1667 opt: 1667  Z-score: 968.0  bits: 186.6 E(85289): 3.5e-47
Smith-Waterman score: 1667; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB7 MKLTFFLGLLALISCFTPSESQRFSRRPYLPGQLPPPPLYRPRWVPPSPPPPYDSRLNSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MKLTFFLGLLALISCFTPSESQRFSRRPYLPGQLPPPPLYRPRWVPPSPPPPYDSRLNSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LSLPFVPGRVPPSSFSRFSQAVILSQLFPLESIRQPRLFPGYPNLHFPLRPYYVGPIRIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 LSLPFVPGRVPPSSFSRFSQAVILSQLFPLESIRQPRLFPGYPNLHFPLRPYYVGPIRIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KPPFPPIPFFLAIYLPISNPEPQINITTADTTITTNPPTTATATTSTSTKPTMTISSSTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 KPPFPPIPFFLAIYLPISNPEPQINITTADTTITTNPPTTATATTSTSTKPTMTISSSTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PISSTPEPATSISAATPAASTENTTQILANRPHTVLLNATVQVTTSNQTILSSPAFKSFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 PISSTPEPATSISAATPAASTENTTQILANRPHTVLLNATVQVTTSNQTILSSPAFKSFW
              190       200       210       220       230       240

               
pF1KB7 QKLFAIFG
       ::::::::
NP_067 QKLFAIFG
               

>>NP_006676 (OMIM: 611593) submaxillary gland androgen-r  (79 aa)
 initn: 228 init1: 228 opt: 268  Z-score: 184.8  bits: 40.0 E(85289): 0.0015
Smith-Waterman score: 268; 55.4% identity (67.6% similar) in 74 aa overlap (1-72:1-74)

                10        20        30        40        50         
pF1KB7 MK-LTFFLGLLALISCFTPSESQRFSRRPYLPGQLPPPPLYRPRWVPPSPPPPYD-SRLN
       :: ::..::: :: .::::.::::  : :: :: : ::  . : .::: :::::  .:. 
NP_006 MKSLTWILGLWALAACFTPGESQRGPRGPYPPGPLAPPQPFGPGFVPPPPPPPYGPGRIP
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KB7 SPLSLPFVPGRVPPSSFSRFSQAVILSQLFPLESIRQPRLFPGYPNLHFPLRPYYVGPIR
        :   :. ::  ::                                              
NP_006 PPPPAPYGPGIFPPPPPQP                                         
               70                                                  




248 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 06:58:18 2016 done: Fri Nov  4 06:58:19 2016
 Total Scan time:  7.480 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]