Result of FASTA (ccds) for
pF1KB7374
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7374, 226 aa
1>>>pF1KB7374 226 - 226 aa - 226 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3268+/-0.000791; mu= 9.2850+/- 0.048
mean_var=86.3189+/-17.388, 0's: 0 Z-trim(109.8): 16 B-trim: 429 in 1/50
Lambda= 0.138045
statistics sampled from 11149 (11164) to 11149 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.343), width: 16
Scan time: 2.360
The best scores are: opt bits E(32554)
CCDS73111.1 PTPN20 gene_id:26095|Hs108|chr10 ( 226) 1529 313.8 5.5e-86
CCDS73106.1 PTPN20 gene_id:26095|Hs108|chr10 ( 217) 1451 298.3 2.5e-81
CCDS73110.1 PTPN20 gene_id:26095|Hs108|chr10 ( 420) 1299 268.2 5.8e-72
CCDS73105.1 PTPN20 gene_id:26095|Hs108|chr10 ( 411) 1221 252.6 2.7e-67
CCDS81454.1 PTPN20 gene_id:26095|Hs108|chr10 ( 206) 1092 226.8 8.1e-60
CCDS73107.1 PTPN20 gene_id:26095|Hs108|chr10 ( 269) 1014 211.3 4.8e-55
CCDS73115.1 PTPN20 gene_id:26095|Hs108|chr10 ( 145) 990 206.4 7.7e-54
CCDS73114.1 PTPN20 gene_id:26095|Hs108|chr10 ( 339) 760 160.8 1e-39
CCDS73108.1 PTPN20 gene_id:26095|Hs108|chr10 ( 136) 686 145.9 1.2e-35
CCDS81456.1 PTPN20 gene_id:26095|Hs108|chr10 ( 197) 553 119.4 1.6e-27
>>CCDS73111.1 PTPN20 gene_id:26095|Hs108|chr10 (226 aa)
initn: 1529 init1: 1529 opt: 1529 Z-score: 1657.2 bits: 313.8 E(32554): 5.5e-86
Smith-Waterman score: 1529; 100.0% identity (100.0% similar) in 226 aa overlap (1-226:1-226)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
130 140 150 160 170 180
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
190 200 210 220
>>CCDS73106.1 PTPN20 gene_id:26095|Hs108|chr10 (217 aa)
initn: 1451 init1: 1451 opt: 1451 Z-score: 1573.5 bits: 298.3 E(32554): 2.5e-81
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 215 aa overlap (12-226:3-217)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
120 130 140 150 160 170
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
180 190 200 210
>>CCDS73110.1 PTPN20 gene_id:26095|Hs108|chr10 (420 aa)
initn: 1324 init1: 1299 opt: 1299 Z-score: 1405.4 bits: 268.2 E(32554): 5.8e-72
Smith-Waterman score: 1299; 99.5% identity (100.0% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
130 140 150 160 170 180
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
::::::::::::::.
CCDS73 PSNREKNRYRDILPYDSTRVPLGKSKDYINASYIRIVNCGEEYFYIATQGPLLSTIDDFW
190 200 210 220 230 240
>>CCDS73105.1 PTPN20 gene_id:26095|Hs108|chr10 (411 aa)
initn: 1246 init1: 1221 opt: 1221 Z-score: 1321.6 bits: 252.6 E(32554): 2.7e-67
Smith-Waterman score: 1221; 99.5% identity (100.0% similar) in 184 aa overlap (12-195:3-186)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
120 130 140 150 160 170
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
::::::::::::::.
CCDS73 PSNREKNRYRDILPYDSTRVPLGKSKDYINASYIRIVNCGEEYFYIATQGPLLSTIDDFW
180 190 200 210 220 230
>>CCDS81454.1 PTPN20 gene_id:26095|Hs108|chr10 (206 aa)
initn: 1092 init1: 1092 opt: 1092 Z-score: 1187.4 bits: 226.8 E(32554): 8.1e-60
Smith-Waterman score: 1092; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMFNIMDIVAQMREQRSG
130 140 150 160 170 180
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
CCDS81 MVQTKEQYHFCYDIVLEVLRKLLTLD
190 200
>>CCDS73107.1 PTPN20 gene_id:26095|Hs108|chr10 (269 aa)
initn: 1014 init1: 1014 opt: 1014 Z-score: 1101.7 bits: 211.3 E(32554): 4.8e-55
Smith-Waterman score: 1014; 100.0% identity (100.0% similar) in 153 aa overlap (12-164:3-155)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMTGTSHSVKQLQFTKWP
120 130 140 150 160 170
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
CCDS73 DHGTPASADSFIKYIRYARKSHLTGPMVVHCSAGIGRTGVFLCVDVVFCAIVKNCSFNIM
180 190 200 210 220 230
>>CCDS73115.1 PTPN20 gene_id:26095|Hs108|chr10 (145 aa)
initn: 990 init1: 990 opt: 990 Z-score: 1080.0 bits: 206.4 E(32554): 7.7e-54
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 145 aa overlap (82-226:1-145)
60 70 80 90 100 110
pF1KB7 EKVKLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPL
::::::::::::::::::::::::::::::
CCDS73 MWTARGPFRRDRWSSEDEEAAGPSQALSPL
10 20 30
120 130 140 150 160 170
pF1KB7 LSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNL
40 50 60 70 80 90
180 190 200 210 220
pF1KB7 PGEFNSGNQPSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PGEFNSGNQPSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
100 110 120 130 140
>>CCDS73114.1 PTPN20 gene_id:26095|Hs108|chr10 (339 aa)
initn: 760 init1: 760 opt: 760 Z-score: 826.7 bits: 160.8 E(32554): 1e-39
Smith-Waterman score: 760; 99.1% identity (100.0% similar) in 114 aa overlap (82-195:1-114)
60 70 80 90 100 110
pF1KB7 EKVKLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPL
::::::::::::::::::::::::::::::
CCDS73 MWTARGPFRRDRWSSEDEEAAGPSQALSPL
10 20 30
120 130 140 150 160 170
pF1KB7 LSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNL
40 50 60 70 80 90
180 190 200 210 220
pF1KB7 PGEFNSGNQPSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
:::::::::::::::::::::::.
CCDS73 PGEFNSGNQPSNREKNRYRDILPYDSTRVPLGKSKDYINASYIRIVNCGEEYFYIATQGP
100 110 120 130 140 150
>>CCDS73108.1 PTPN20 gene_id:26095|Hs108|chr10 (136 aa)
initn: 686 init1: 686 opt: 686 Z-score: 753.3 bits: 145.9 E(32554): 1.2e-35
Smith-Waterman score: 739; 61.9% identity (61.9% similar) in 215 aa overlap (12-226:3-136)
10 20 30 40 50 60
pF1KB7 MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MIVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRN
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSDTRKIVS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLS-------
60 70 80 90 100
130 140 150 160 170 180
pF1KB7 EGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNLPGEFNSGNQ
CCDS73 ------------------------------------------------------------
190 200 210 220
pF1KB7 PSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
:::::::::::::::::::::::::::::::
CCDS73 --------------VQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
110 120 130
>>CCDS81456.1 PTPN20 gene_id:26095|Hs108|chr10 (197 aa)
initn: 553 init1: 553 opt: 553 Z-score: 607.6 bits: 119.4 E(32554): 1.6e-27
Smith-Waterman score: 553; 100.0% identity (100.0% similar) in 83 aa overlap (82-164:1-83)
60 70 80 90 100 110
pF1KB7 EKVKLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPL
::::::::::::::::::::::::::::::
CCDS81 MWTARGPFRRDRWSSEDEEAAGPSQALSPL
10 20 30
120 130 140 150 160 170
pF1KB7 LSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMALELKNL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LSDTRKIVSEGELDQLAQIRPLIFNFHEQTAIKDCLKILEEKTAAYDIMQEFMTGTSHSV
40 50 60 70 80 90
180 190 200 210 220
pF1KB7 PGEFNSGNQPSNREKNRYRDILPFQHHGYSGPNERTTFWHGSNEGAVSLLLRYCA
CCDS81 KQLQFTKWPDHGTPASADSFIKYIRYARKSHLTGPMVVHCSAGIGRTGVFLCVDVVFCAI
100 110 120 130 140 150
226 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 06:58:51 2016 done: Fri Nov 4 06:58:52 2016
Total Scan time: 2.360 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]