FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7379, 180 aa
  1>>>pF1KB7379 180 - 180 aa - 180 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5722+/-0.00116; mu= -5.6476+/- 0.071
 mean_var=244.4952+/-49.577, 0's: 0 Z-trim(110.4): 34  B-trim: 87 in 1/49
 Lambda= 0.082024
 statistics sampled from 11530 (11548) to 11530 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.355), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS35419.1 SPANXN2 gene_id:494119|Hs108|chrX      ( 180) 1163 149.7   9e-37
CCDS35418.1 SPANXN3 gene_id:139067|Hs108|chrX      ( 141)  690 93.7 5.2e-20


>>CCDS35419.1 SPANXN2 gene_id:494119|Hs108|chrX           (180 aa)
 initn: 1163 init1: 1163 opt: 1163  Z-score: 773.7  bits: 149.7 E(32554): 9e-37
Smith-Waterman score: 1163; 100.0% identity (100.0% similar) in 180 aa overlap (1-180:1-180)

               10        20        30        40        50        60
pF1KB7 MEQPTSSTNGEKRKSPCESNNKKNDEMQEAPNRVLAPKQSLQKTKTIEYLTIIVYYYRKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MEQPTSSTNGEKRKSPCESNNKKNDEMQEAPNRVLAPKQSLQKTKTIEYLTIIVYYYRKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TKINSNQLEKDQSRENSINPVQEEEDEGLDSAEGSSQEDEDLDSSEGSSQEDEDLDSSEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 TKINSNQLEKDQSRENSINPVQEEEDEGLDSAEGSSQEDEDLDSSEGSSQEDEDLDSSEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SSQEDEDLDSSEGSSQEDEDLDSSEGSSQEDEDLDPPEGSSQEDEDLDSSEGSSQEGGED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SSQEDEDLDSSEGSSQEDEDLDSSEGSSQEDEDLDPPEGSSQEDEDLDSSEGSSQEGGED
              130       140       150       160       170       180

>>CCDS35418.1 SPANXN3 gene_id:139067|Hs108|chrX           (141 aa)
 initn: 922 init1: 688 opt: 690  Z-score: 472.7  bits: 93.7 E(32554): 5.2e-20
Smith-Waterman score: 690; 77.3% identity (89.4% similar) in 141 aa overlap (1-140:1-141)

               10        20        30        40        50        60
pF1KB7 MEQPTSSTNGEKRKSPCESNNKKNDEMQEAPNRVLAPKQSLQKTKTIEYLTIIVYYYRKH
       :::::::::::: ::::::::::::::::.:::::::.:::..::: ::  :.::: :: 
CCDS35 MEQPTSSTNGEKTKSPCESNNKKNDEMQEVPNRVLAPEQSLKNTKTSEYPIIFVYYLRKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TKINSNQLEKDQSRENSINPVQEEEDEGLDSAEGSSQEDEDLDSSEGSSQEDEDLDSSEG
        ::::::::..::.::::::.:.:::::.: .::::.:::::   :: :.::.:::::::
CCDS35 KKINSNQLENEQSQENSINPIQKEEDEGVDLSEGSSNEDEDLGPCEGPSKEDKDLDSSEG
               70        80        90       100       110       120

              130        140       150       160       170         
pF1KB7 SSQEDEDLDSSEGSSQED-EDLDSSEGSSQEDEDLDPPEGSSQEDEDLDSSEGSSQEGGE
       ::::::::  ::::::.. ::                                       
CCDS35 SSQEDEDLGLSEGSSQDSGED                                       
              130       140                                        




180 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:02:13 2016 done: Fri Nov  4 07:02:14 2016
 Total Scan time:  2.010 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]