FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7380, 336 aa
  1>>>pF1KB7380 336 - 336 aa - 336 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9520+/-0.000831; mu= 9.0382+/- 0.050
 mean_var=119.7651+/-23.929, 0's: 0 Z-trim(111.1): 22  B-trim: 74 in 1/51
 Lambda= 0.117195
 statistics sampled from 12119 (12134) to 12119 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.373), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS55048.1 AK9 gene_id:221264|Hs108|chr6          (1911) 1907 333.6 8.1e-91


>>CCDS55048.1 AK9 gene_id:221264|Hs108|chr6               (1911 aa)
 initn: 1907 init1: 1907 opt: 1907  Z-score: 1744.0  bits: 333.6 E(32554): 8.1e-91
Smith-Waterman score: 1907; 100.0% identity (100.0% similar) in 290 aa overlap (1-290:922-1211)

                                             10        20        30
pF1KB7                               MKERKRHLGDTKHFCPVVLKENFILQPGNT
                                     ::::::::::::::::::::::::::::::
CCDS55 DYEEETEDYQTEAEVDEELEEEEEEEGEDKMKERKRHLGDTKHFCPVVLKENFILQPGNT
             900       910       920       930       940       950 

               40        50        60        70        80        90
pF1KB7 EEAAKYREKIYYFSSAEAKEKFLEHPEDYVAHEEPLKAPPLRICLVGPQGSGKTMCGRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEAAKYREKIYYFSSAEAKEKFLEHPEDYVAHEEPLKAPPLRICLVGPQGSGKTMCGRQL
             960       970       980       990      1000      1010 

              100       110       120       130       140       150
pF1KB7 AEKLNIFHIQFEEVLQEKLLLKTEKKVGPEFEEDSENEQAAKQELEELAIQANVKVEEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AEKLNIFHIQFEEVLQEKLLLKTEKKVGPEFEEDSENEQAAKQELEELAIQANVKVEEEN
            1020      1030      1040      1050      1060      1070 

              160       170       180       190       200       210
pF1KB7 TKKQLPEVQLTEEEEVIKSSLMENEPLPPEILEVILSEWWLKEPIRSTGFILDGFPRYPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TKKQLPEVQLTEEEEVIKSSLMENEPLPPEILEVILSEWWLKEPIRSTGFILDGFPRYPE
            1080      1090      1100      1110      1120      1130 

              220       230       240       250       260       270
pF1KB7 EAQFLGDRGFFPDAAVFIQVDDQDIFDRLLPAQIEKWKLKQKKKLERKKLIKDMKAKIRV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EAQFLGDRGFFPDAAVFIQVDDQDIFDRLLPAQIEKWKLKQKKKLERKKLIKDMKAKIRV
            1140      1150      1160      1170      1180      1190 

              280       290       300       310       320       330
pF1KB7 DTIAKRRAELILERDKKRREVSSFVFFFKTGSHSVAQGRVQWHNHSSLQPRTPGLKGSSH
       ::::::::::::::::::::                                        
CCDS55 DTIAKRRAELILERDKKRRENVVRDDEEISEEELEEDNDDIENILEDEFPKDEEEMSGEE
            1200      1210      1220      1230      1240      1250 




336 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:03:27 2016 done: Fri Nov  4 07:03:27 2016
 Total Scan time:  3.060 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]