FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7393, 414 aa
  1>>>pF1KB7393 414 - 414 aa - 414 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5633+/-0.00116; mu= 10.4095+/- 0.069
 mean_var=106.7842+/-21.704, 0's: 0 Z-trim(104.7): 147  B-trim: 0 in 0/47
 Lambda= 0.124114
 statistics sampled from 7889 (8056) to 7889 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.247), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS9686.1 LRR1 gene_id:122769|Hs108|chr14         ( 414) 2728 499.8  2e-141
CCDS9687.1 LRR1 gene_id:122769|Hs108|chr14         ( 146)  621 122.2 3.2e-28


>>CCDS9686.1 LRR1 gene_id:122769|Hs108|chr14              (414 aa)
 initn: 2728 init1: 2728 opt: 2728  Z-score: 2652.5  bits: 499.8 E(32554): 2e-141
Smith-Waterman score: 2728; 100.0% identity (100.0% similar) in 414 aa overlap (1-414:1-414)

               10        20        30        40        50        60
pF1KB7 MKLHCEVEVISRHLPALGLRNRGKGVRAVLSLCQQTSRSQPPVRAFLLISTLKDKRGTRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MKLHCEVEVISRHLPALGLRNRGKGVRAVLSLCQQTSRSQPPVRAFLLISTLKDKRGTRY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ELRENIEQFFTKFVDEGKATVRLKEPPVDICLSKAISSSLKGFLSAMRLAHRGCNVDTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 ELRENIEQFFTKFVDEGKATVRLKEPPVDICLSKAISSSLKGFLSAMRLAHRGCNVDTPV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 STLTPVKTSEFENFKTKMVITSKKDYPLSKNFPYSLEHLQTSYCGLVRVDMRMLCLKSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 STLTPVKTSEFENFKTKMVITSKKDYPLSKNFPYSLEHLQTSYCGLVRVDMRMLCLKSLR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 KLDLSHNHIKKLPATIGDLIHLQELNLNDNHLESFSVALCHSTLQKSLRSLDLSKNKIKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KLDLSHNHIKKLPATIGDLIHLQELNLNDNHLESFSVALCHSTLQKSLRSLDLSKNKIKA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LPVQFCQLQELKNLKLDDNELIQFPCKIGQLINLRFLSAARNKLPFLPSEFRNLSLEYLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LPVQFCQLQELKNLKLDDNELIQFPCKIGQLINLRFLSAARNKLPFLPSEFRNLSLEYLD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LFGNTFEQPKVLPVIKLQAPLTLLESSARTILHNRIPYGSHIIPFHLCQDLDTAKICVCG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LFGNTFEQPKVLPVIKLQAPLTLLESSARTILHNRIPYGSHIIPFHLCQDLDTAKICVCG
              310       320       330       340       350       360

              370       380       390       400       410    
pF1KB7 RFCLNSFIQGTTTMNLHSVAHTVVLVDNLGGTEAPIISYFCSLGCYVNSSDMLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 RFCLNSFIQGTTTMNLHSVAHTVVLVDNLGGTEAPIISYFCSLGCYVNSSDMLK
              370       380       390       400       410    

>>CCDS9687.1 LRR1 gene_id:122769|Hs108|chr14              (146 aa)
 initn: 634 init1: 617 opt: 621  Z-score: 620.1  bits: 122.2 E(32554): 3.2e-28
Smith-Waterman score: 621; 87.6% identity (93.8% similar) in 113 aa overlap (1-112:1-113)

               10        20        30        40        50        60
pF1KB7 MKLHCEVEVISRHLPALGLRNRGKGVRAVLSLCQQTSRSQPPVRAFLLISTLKDKRGTRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MKLHCEVEVISRHLPALGLRNRGKGVRAVLSLCQQTSRSQPPVRAFLLISTLKDKRGTRY
               10        20        30        40        50        60

               70        80        90        100       110         
pF1KB7 ELRENIEQFFTKFVDEGKATVRLKEPPVDICLSK-AISSSLKGFLSAMRLAHRGCNVDTP
       :::::::::::::::::::::::::::::::::: .:  : ... :  :...:       
CCDS96 ELRENIEQFFTKFVDEGKATVRLKEPPVDICLSKDSIWLSYHSIPSLPRFGYRKNLCLWK
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB7 VSTLTPVKTSEFENFKTKMVITSKKDYPLSKNFPYSLEHLQTSYCGLVRVDMRMLCLKSL
                                                                   
CCDS96 ILSELFHSRNYYHESAFCCPHCGLSR                                  
              130       140                                        




414 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:21:18 2016 done: Fri Nov  4 07:21:18 2016
 Total Scan time:  2.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]