FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7398, 325 aa
  1>>>pF1KB7398 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4968+/-0.00078; mu= 3.5941+/- 0.047
 mean_var=206.9915+/-43.654, 0's: 0 Z-trim(116.4): 24  B-trim: 867 in 2/50
 Lambda= 0.089145
 statistics sampled from 17030 (17053) to 17030 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.524), width:  16
 Scan time:  3.270

The best scores are:                                      opt bits E(32554)
CCDS4693.1 C6orf15 gene_id:29113|Hs108|chr6        ( 325) 2387 318.7 4.1e-87


>>CCDS4693.1 C6orf15 gene_id:29113|Hs108|chr6             (325 aa)
 initn: 2387 init1: 2387 opt: 2387  Z-score: 1677.5  bits: 318.7 E(32554): 4.1e-87
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB7 MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV
              250       260       270       280       290       300

              310       320     
pF1KB7 LRPPGSSWNIPAGFPNPPSPRLQWG
       :::::::::::::::::::::::::
CCDS46 LRPPGSSWNIPAGFPNPPSPRLQWG
              310       320     




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:24:48 2016 done: Fri Nov  4 07:24:49 2016
 Total Scan time:  3.270 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]