FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7398, 325 aa
  1>>>pF1KB7398 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9544+/-0.00031; mu= 0.9942+/- 0.019
 mean_var=253.1845+/-52.815, 0's: 0 Z-trim(124.1): 30  B-trim: 33 in 1/58
 Lambda= 0.080604
 statistics sampled from 45128 (45163) to 45128 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.53), width:  16
 Scan time:  9.730

The best scores are:                                      opt bits E(85289)
NP_054789 (OMIM: 611401) uncharacterized protein C ( 325) 2387 289.9 4.9e-78


>>NP_054789 (OMIM: 611401) uncharacterized protein C6orf  (325 aa)
 initn: 2387 init1: 2387 opt: 2387  Z-score: 1521.9  bits: 289.9 E(85289): 4.9e-78
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB7 MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 MQGRVAGSCAPLGLLLVCLHLPGLFARSIGVVEEKVSQNLGTNLPQLGQPSSTGPSNSEH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 PQPALDPRSNDLARVPLKLSVPASDGFPPAGGSAVQRWPPSWGLPAMDSWPPEDPWQMMA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 AAAEDRLGEALPEELSYLSSAAALAPGSGPLPGESSPDATGLSPKASLLHQDSESRRLPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 SNSLGAGGKILSQRPPWSLIHRVLPDHPWGTLNPSVSWGGGGPGTGWGTRPMPHPEGIWG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_054 INNQPPGTSWGNINRYPGGSWGNINRYPGGSWGNINRYPGGSWGNIHLYPGINNPFPPGV
              250       260       270       280       290       300

              310       320     
pF1KB7 LRPPGSSWNIPAGFPNPPSPRLQWG
       :::::::::::::::::::::::::
NP_054 LRPPGSSWNIPAGFPNPPSPRLQWG
              310       320     




325 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:24:49 2016 done: Fri Nov  4 07:24:50 2016
 Total Scan time:  9.730 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]