FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7399, 176 aa
  1>>>pF1KB7399 176 - 176 aa - 176 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1959+/-0.000632; mu= 12.2665+/- 0.038
 mean_var=50.2115+/- 9.844, 0's: 0 Z-trim(108.3): 13  B-trim: 0 in 0/53
 Lambda= 0.180998
 statistics sampled from 10137 (10148) to 10137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.312), width:  16
 Scan time:  1.610

The best scores are:                                      opt bits E(32554)
CCDS56593.1 LCN9 gene_id:392399|Hs108|chr9         ( 176) 1183 316.1 6.9e-87


>>CCDS56593.1 LCN9 gene_id:392399|Hs108|chr9              (176 aa)
 initn: 1183 init1: 1183 opt: 1183  Z-score: 1673.4  bits: 316.1 E(32554): 6.9e-87
Smith-Waterman score: 1183; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KB7 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
               70        80        90       100       110       120

              130       140       150       160       170      
pF1KB7 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
              130       140       150       160       170      




176 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:25:22 2016 done: Fri Nov  4 07:25:23 2016
 Total Scan time:  1.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]