Result of FASTA (omim) for
pF1KB7399
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7399, 176 aa
1>>>pF1KB7399 176 - 176 aa - 176 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5058+/-0.000307; mu= 16.5304+/- 0.019
mean_var=50.7211+/-10.164, 0's: 0 Z-trim(115.2): 30 B-trim: 1316 in 1/53
Lambda= 0.180086
statistics sampled from 25449 (25479) to 25449 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.299), width: 16
Scan time: 4.710
The best scores are: opt bits E(85289)
NP_001001676 (OMIM: 612903) epididymal-specific li ( 176) 1183 314.5 5.6e-86
XP_016870201 (OMIM: 612903) PREDICTED: epididymal- ( 227) 1162 309.1 3e-84
XP_011517051 (OMIM: 173310) PREDICTED: glycodelin ( 180) 171 51.6 8e-07
NP_001018059 (OMIM: 173310) glycodelin isoform 1 p ( 180) 171 51.6 8e-07
NP_002562 (OMIM: 173310) glycodelin isoform 1 prec ( 180) 171 51.6 8e-07
XP_011517047 (OMIM: 173310) PREDICTED: glycodelin ( 204) 171 51.6 8.9e-07
XP_011517048 (OMIM: 173310) PREDICTED: glycodelin ( 204) 171 51.6 8.9e-07
XP_011517049 (OMIM: 173310) PREDICTED: glycodelin ( 204) 171 51.6 8.9e-07
XP_011516977 (OMIM: 151675) PREDICTED: lipocalin-1 ( 290) 156 47.8 1.8e-05
NP_001239547 (OMIM: 151675) lipocalin-1 isoform 2 ( 233) 155 47.5 1.8e-05
NP_001239546 (OMIM: 151675) lipocalin-1 isoform 1 ( 176) 145 44.8 8.5e-05
NP_002288 (OMIM: 151675) lipocalin-1 isoform 1 pre ( 176) 145 44.8 8.5e-05
NP_001239548 (OMIM: 151675) lipocalin-1 isoform 3 ( 230) 144 44.6 0.00013
XP_016870272 (OMIM: 173310) PREDICTED: glycodelin ( 103) 128 40.3 0.0012
XP_011517054 (OMIM: 173310) PREDICTED: glycodelin ( 143) 128 40.3 0.0015
NP_055396 (OMIM: 604606) odorant-binding protein 2 ( 170) 119 38.1 0.0089
NP_001275916 (OMIM: 604606) odorant-binding protei ( 170) 119 38.1 0.0089
>>NP_001001676 (OMIM: 612903) epididymal-specific lipoca (176 aa)
initn: 1183 init1: 1183 opt: 1183 Z-score: 1664.6 bits: 314.5 E(85289): 5.6e-86
Smith-Waterman score: 1183; 100.0% identity (100.0% similar) in 176 aa overlap (1-176:1-176)
10 20 30 40 50 60
pF1KB7 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
130 140 150 160 170
>>XP_016870201 (OMIM: 612903) PREDICTED: epididymal-spec (227 aa)
initn: 1162 init1: 1162 opt: 1162 Z-score: 1633.5 bits: 309.1 E(85289): 3e-84
Smith-Waterman score: 1162; 99.4% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB7 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMQQASDL
130 140 150 160 170 180
XP_016 SQLSGSWHTSALASNDSAQIKPGGRFRFFINTLDPKDGNLHGEILVP
190 200 210 220
>>XP_011517051 (OMIM: 173310) PREDICTED: glycodelin isof (180 aa)
initn: 164 init1: 100 opt: 171 Z-score: 243.5 bits: 51.6 E(85289): 8e-07
Smith-Waterman score: 171; 27.9% identity (65.9% similar) in 129 aa overlap (1-126:1-127)
10 20 30 40 50
pF1KB7 MALLLLSLGLSLI-AAQEFD-PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKE-NGDLR
: :::.::..:. .. .: :.: ... .. ...:.:.:. ::..... . .. ::
XP_011 MLCLLLTLGVALVCGVPAMDIPQT--KQDLELPKLAGTWHSMAMATNNISLMATLKAPLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYR
: . .. . .: . .. .. :: :. ::::. ...::: : ... .:::
XP_011 VHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LFITFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. . ::.
XP_011 NFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPC
120 130 140 150 160 170
>>NP_001018059 (OMIM: 173310) glycodelin isoform 1 precu (180 aa)
initn: 164 init1: 100 opt: 171 Z-score: 243.5 bits: 51.6 E(85289): 8e-07
Smith-Waterman score: 171; 27.9% identity (65.9% similar) in 129 aa overlap (1-126:1-127)
10 20 30 40 50
pF1KB7 MALLLLSLGLSLI-AAQEFD-PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKE-NGDLR
: :::.::..:. .. .: :.: ... .. ...:.:.:. ::..... . .. ::
NP_001 MLCLLLTLGVALVCGVPAMDIPQT--KQDLELPKLAGTWHSMAMATNNISLMATLKAPLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYR
: . .. . .: . .. .. :: :. ::::. ...::: : ... .:::
NP_001 VHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LFITFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. . ::.
NP_001 NFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPC
120 130 140 150 160 170
>>NP_002562 (OMIM: 173310) glycodelin isoform 1 precurso (180 aa)
initn: 164 init1: 100 opt: 171 Z-score: 243.5 bits: 51.6 E(85289): 8e-07
Smith-Waterman score: 171; 27.9% identity (65.9% similar) in 129 aa overlap (1-126:1-127)
10 20 30 40 50
pF1KB7 MALLLLSLGLSLI-AAQEFD-PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKE-NGDLR
: :::.::..:. .. .: :.: ... .. ...:.:.:. ::..... . .. ::
NP_002 MLCLLLTLGVALVCGVPAMDIPQT--KQDLELPKLAGTWHSMAMATNNISLMATLKAPLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYR
: . .. . .: . .. .. :: :. ::::. ...::: : ... .:::
NP_002 VHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LFITFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. . ::.
NP_002 NFLFLCLQDTTTPIQSMMCQYLARVLVEDDEIMQGFIRAFRPLPRHLWYLLDLKQMEEPC
120 130 140 150 160 170
>>XP_011517047 (OMIM: 173310) PREDICTED: glycodelin isof (204 aa)
initn: 164 init1: 100 opt: 171 Z-score: 242.7 bits: 51.6 E(85289): 8.9e-07
Smith-Waterman score: 171; 27.9% identity (65.9% similar) in 129 aa overlap (1-126:1-127)
10 20 30 40 50
pF1KB7 MALLLLSLGLSLI-AAQEFD-PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKE-NGDLR
: :::.::..:. .. .: :.: ... .. ...:.:.:. ::..... . .. ::
XP_011 MLCLLLTLGVALVCGVPAMDIPQT--KQDLELPKLAGTWHSMAMATNNISLMATLKAPLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYR
: . .. . .: . .. .. :: :. ::::. ...::: : ... .:::
XP_011 VHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LFITFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. . ::.
XP_011 NFLFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGF
120 130 140 150 160 170
>>XP_011517048 (OMIM: 173310) PREDICTED: glycodelin isof (204 aa)
initn: 164 init1: 100 opt: 171 Z-score: 242.7 bits: 51.6 E(85289): 8.9e-07
Smith-Waterman score: 171; 27.9% identity (65.9% similar) in 129 aa overlap (1-126:1-127)
10 20 30 40 50
pF1KB7 MALLLLSLGLSLI-AAQEFD-PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKE-NGDLR
: :::.::..:. .. .: :.: ... .. ...:.:.:. ::..... . .. ::
XP_011 MLCLLLTLGVALVCGVPAMDIPQT--KQDLELPKLAGTWHSMAMATNNISLMATLKAPLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYR
: . .. . .: . .. .. :: :. ::::. ...::: : ... .:::
XP_011 VHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LFITFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. . ::.
XP_011 NFLFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGF
120 130 140 150 160 170
>>XP_011517049 (OMIM: 173310) PREDICTED: glycodelin isof (204 aa)
initn: 164 init1: 100 opt: 171 Z-score: 242.7 bits: 51.6 E(85289): 8.9e-07
Smith-Waterman score: 171; 27.9% identity (65.9% similar) in 129 aa overlap (1-126:1-127)
10 20 30 40 50
pF1KB7 MALLLLSLGLSLI-AAQEFD-PHTVMQRNYNVARVSGVWYSIFMASDDLNRIKE-NGDLR
: :::.::..:. .. .: :.: ... .. ...:.:.:. ::..... . .. ::
XP_011 MLCLLLTLGVALVCGVPAMDIPQT--KQDLELPKLAGTWHSMAMATNNISLMATLKAPLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 VFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYR
: . .. . .: . .. .. :: :. ::::. ...::: : ... .:::
XP_011 VHITSLLPTPEDNLEIVLHRWENNSCVEKKVLGEKTENPKKFKINYTVANEATLLDTDYD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 LFITFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. . ::.
XP_011 NFLFLCLQDTTTPIQSMMCQYLGKASGAPQLSWKPQGPRTDPASSTARVLVEDDEIMQGF
120 130 140 150 160 170
>>XP_011516977 (OMIM: 151675) PREDICTED: lipocalin-1 iso (290 aa)
initn: 85 init1: 61 opt: 156 Z-score: 219.4 bits: 47.8 E(85289): 1.8e-05
Smith-Waterman score: 156; 25.9% identity (56.8% similar) in 185 aa overlap (1-174:65-243)
10 20 30
pF1KB7 MALLLLSLGLSLIAAQEFDPHTVMQRNYNV
: :::...:.:::: .. : .. . ..
XP_011 GIKGGCGRTGTASPSPSKRPVRRPWTQTPEMKPLLLAVSLGLIAA--LQAHHLLASDEEI
40 50 60 70 80 90
40 50 60 70 80 90
pF1KB7 ARVSGVWYSIFMASDDLNRIKENGDLRVFVRNIEHLKNGSLIFDFEYMVQGECVAVVVVC
:::.:: :. : .. : . : .. :..:.: ....:.: : .:
XP_011 QDVSGTWYLKAMTVD--REFPEMNLESVTPMTLTTLEGGNLEAKVTMLISGRCQEVKAVL
100 110 120 130 140 150
100 110 120 130
pF1KB7 EKTEKNGEYSINYEGQNTVAVSET---DYRLFIT---FHLQNFRN----GTET-HTLALY
:::.. :.:. . :.... . .. :. .: .: . :. : . ..:
XP_011 EKTDEPGKYTADG-GKHVAYIIRSHVKDHYIFYCEGELHGKPVRGVKLVGRDPKNNLEAL
160 170 180 190 200
140 150 160 170
pF1KB7 ETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
: :: . :.... . : : . ..: .:::
XP_011 EDFEKAA-GARGLSTESILIPRQSGRRHGPAEPPMSPRGDISRAALHGRITVLRLILALS
210 220 230 240 250 260
XP_011 FLGWWSWWLMRGPGPDCIPGVS
270 280 290
>>NP_001239547 (OMIM: 151675) lipocalin-1 isoform 2 prec (233 aa)
initn: 80 init1: 61 opt: 155 Z-score: 219.4 bits: 47.5 E(85289): 1.8e-05
Smith-Waterman score: 155; 26.2% identity (59.6% similar) in 141 aa overlap (1-141:1-136)
10 20 30 40 50 60
pF1KB7 MALLLLSLGLSLIAAQEFDPHTVMQRNYNVARVSGVWYSIFMASDDLNRIKENGDLRVFV
: :::...:.:::: .. : .. . .. :::.:: :. : .. : . :
NP_001 MKPLLLAVSLGLIAA--LQAHHLLASDEEIQDVSGTWYLKAMTVD--REFPEMNLESVTP
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 RNIEHLKNGSLIFDFEYMVQGECVAVVVVCEKTEKNGEYSINYEGQNTVAVSETDYRLFI
.. :..:.: ....:.: : .: :::.. :.:. . :.... . .. .
NP_001 MTLTTLEGGNLEAKVTMLISGRCQEVKAVLEKTDEPGKYTADG-GKHVAYIIRSHVKDHY
60 70 80 90 100 110
130 140 150 160 170
pF1KB7 TFHLQNFRNGTETHTLALYETCEKYGLGSQNIIDLTNKDPCYSKHYRSPPRPPMRW
:. .. .: .. . : ::
NP_001 IFYCEGELHGKPVRGVKLVETPRTTWKPWRTLRKPQEPADSARRASSSPGRAKPALQGAI
120 130 140 150 160 170
176 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:25:23 2016 done: Fri Nov 4 07:25:24 2016
Total Scan time: 4.710 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]