FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7401, 197 aa
  1>>>pF1KB7401 197 - 197 aa - 197 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5647+/-0.000715; mu= 16.9033+/- 0.043
 mean_var=54.8070+/-11.445, 0's: 0 Z-trim(107.6): 16  B-trim: 25 in 1/49
 Lambda= 0.173243
 statistics sampled from 9656 (9664) to 9656 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.297), width:  16
 Scan time:  1.780

The best scores are:                                      opt bits E(32554)
CCDS66723.1 TMEM179 gene_id:388021|Hs108|chr14     ( 233) 1181 302.8 1.1e-82
CCDS73688.1 TMEM179 gene_id:388021|Hs108|chr14     ( 211) 1179 302.3 1.4e-82


>>CCDS66723.1 TMEM179 gene_id:388021|Hs108|chr14          (233 aa)
 initn: 1181 init1: 1181 opt: 1181  Z-score: 1598.3  bits: 302.8 E(32554): 1.1e-82
Smith-Waterman score: 1181; 99.4% identity (99.4% similar) in 176 aa overlap (1-176:1-176)

               10        20        30        40        50        60
pF1KB7 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQVGGSGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :    
CCDS66 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQFGLWAS
              130       140       150       160       170       180

              190                                           
pF1KB7 EGRLAMLGGGHLLLDIC                                    
                                                            
CCDS66 WLAWLAITTLAFLKVYHNYRQEDLLDSLIHEKELLLARPSPRTSFQEEKSAVI
              190       200       210       220       230   

>>CCDS73688.1 TMEM179 gene_id:388021|Hs108|chr14          (211 aa)
 initn: 1179 init1: 1179 opt: 1179  Z-score: 1596.2  bits: 302.3 E(32554): 1.4e-82
Smith-Waterman score: 1179; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)

               10        20        30        40        50        60
pF1KB7 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MALNNFLFAQCACYFLAFLFSFVVVVPLSENGHDFRGRCLLFTEGMWLSANLTVQERERF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TVQEWGPPAACRFSLLASLLSLLLAAAHAWRTLFFLCKGHEGSFFSAFLNLLVSAFVVFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQVGGSGQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::     
CCDS73 VFIASTIVSVGFTMWCDTITEKGTVPHSCEELQDIDLELGVDNSAFYDQFAIAQVQFRTP
              130       140       150       160       170       180

              190                     
pF1KB7 EGRLAMLGGGHLLLDIC              
                                      
CCDS73 GWPLKALAGRGWPEDASPGQEPSKGAGHGWA
              190       200       210 




197 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:26:27 2016 done: Fri Nov  4 07:26:27 2016
 Total Scan time:  1.780 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]