FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7406, 219 aa
  1>>>pF1KB7406 219 - 219 aa - 219 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8112+/-0.000661; mu= 12.7830+/- 0.040
 mean_var=94.0720+/-18.986, 0's: 0 Z-trim(113.2): 53  B-trim: 0 in 0/52
 Lambda= 0.132234
 statistics sampled from 13826 (13880) to 13826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.426), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS46320.1 FIGLA gene_id:344018|Hs108|chr2        ( 219) 1444 284.7 3.1e-77


>>CCDS46320.1 FIGLA gene_id:344018|Hs108|chr2             (219 aa)
 initn: 1444 init1: 1444 opt: 1444  Z-score: 1500.0  bits: 284.7 E(32554): 3.1e-77
Smith-Waterman score: 1444; 100.0% identity (100.0% similar) in 219 aa overlap (1-219:1-219)

               10        20        30        40        50        60
pF1KB7 MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 QLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LEGAKDSKKQDPDEQSYSNNSSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LEGAKDSKKQDPDEQSYSNNSSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSG
              130       140       150       160       170       180

              190       200       210         
pF1KB7 EPAHACRHSVMSTTEIISPTRSLDRFPEVELLSHRLPQV
       :::::::::::::::::::::::::::::::::::::::
CCDS46 EPAHACRHSVMSTTEIISPTRSLDRFPEVELLSHRLPQV
              190       200       210         




219 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:29:24 2016 done: Fri Nov  4 07:29:24 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]