Result of FASTA (ccds) for
pF1KB7407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7407, 213 aa
1>>>pF1KB7407 213 - 213 aa - 213 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2220+/-0.000506; mu= 15.0564+/- 0.031
mean_var=70.6367+/-14.052, 0's: 0 Z-trim(115.4): 16 B-trim: 0 in 0/55
Lambda= 0.152602
statistics sampled from 15980 (15996) to 15980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.491), width: 16
Scan time: 2.020
The best scores are: opt bits E(32554)
CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 ( 213) 1527 344.0 4e-95
CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 ( 228) 676 156.7 1.1e-38
CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 ( 238) 561 131.4 4.6e-31
CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 ( 205) 457 108.4 3.2e-24
CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 ( 183) 438 104.2 5.3e-23
CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 ( 201) 396 95.0 3.5e-20
CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 ( 193) 389 93.5 9.8e-20
CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 ( 207) 384 92.4 2.2e-19
>>CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 (213 aa)
initn: 1527 init1: 1527 opt: 1527 Z-score: 1821.2 bits: 344.0 E(32554): 4e-95
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 213 aa overlap (1-213:1-213)
10 20 30 40 50 60
pF1KB7 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEA
130 140 150 160 170 180
190 200 210
pF1KB7 PEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
:::::::::::::::::::::::::::::::::
CCDS12 PEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
190 200 210
>>CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 (228 aa)
initn: 671 init1: 475 opt: 676 Z-score: 808.2 bits: 156.7 E(32554): 1.1e-38
Smith-Waterman score: 676; 58.1% identity (78.4% similar) in 167 aa overlap (11-177:7-165)
10 20 30 40 50 60
pF1KB7 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
: :..: : :.. . ...: .:::::::: :::::. : :
CCDS40 MLHVEMLTLVFLVLWMCVFSQ-DPGSKAVADRYAVYWNSSNPRFQRG------DYH
10 20 30 40
70 80 90 100 110 120
pF1KB7 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAP
..: ::::::..:::: .: .. :.::::::: .:...::: ..:::::::::: .:
CCDS40 IDVCINDYLDVFCPHYEDSVPE-DKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEA
.::::::::::::::::::::::::.::.:::.. :. : ::.:::.::::: .
CCDS40 NGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCMKTI
110 120 130 140 150 160
190 200 210
pF1KB7 PEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
CCDS40 GVHDRVFDVNDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
170 180 190 200 210 220
>>CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 (238 aa)
initn: 593 init1: 266 opt: 561 Z-score: 671.1 bits: 131.4 E(32554): 4.6e-31
Smith-Waterman score: 561; 53.4% identity (71.3% similar) in 174 aa overlap (4-170:2-165)
10 20 30 40 50 60
pF1KB7 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
: ::: :::::.:.: :. :. . : ..:.::::: :: ... :::
CCDS10 MAAAPLL-LLLLLVPVPLLPLL-AQGPGGALGNRHAVYWNSSNQHLRRE------GYT
10 20 30 40 50
70 80 90 100 110
pF1KB7 VEVSINDYLDIYCPHY-------GAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWE
:.:..::::::::::: :: :. :.::::::. .:. .:. : ::::::
CCDS10 VQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQ-GFKRWE
60 70 80 90 100
120 130 140 150 160 170
pF1KB7 CNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPT
:::: :: .:.::::::: .. ::::.::. :::::::: :: . . :::.::.:
CCDS10 CNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS-TPTHNLHWKCLRMKVFVCCA
110 120 130 140 150 160
180 190 200 210
pF1KB7 NETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
CCDS10 STSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGI
170 180 190 200 210 220
>>CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 (205 aa)
initn: 470 init1: 362 opt: 457 Z-score: 548.3 bits: 108.4 E(32554): 3.2e-24
Smith-Waterman score: 462; 42.7% identity (62.0% similar) in 192 aa overlap (32-211:16-195)
10 20 30 40 50 60
pF1KB7 APAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTV
: .::..:.:: :::.:. ..: ::.
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFR---NED---YTI
10 20 30
70 80 90 100 110 120
pF1KB7 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPG
.:..:::.:: :::: ::.:.::.:. : . :. ... ::.::::.:
CCDS10 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKH
40 50 60 70 80 90
130 140 150 160 170
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVR----------
:: :.::::: ::::.:: ::. :: ::::: . :: :::::: :
CCDS10 GPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAH
100 110 120 130 140 150
180 190 200 210
pF1KB7 --PTNETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
: .. : : .: .: . .. ::: :. ::.:
CCDS10 DNPQEKRL-AADDPEVRVLHSIGHSAAPRLF----PLAWTVLLLPLLLLQTP
160 170 180 190 200
>>CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 (183 aa)
initn: 435 init1: 369 opt: 438 Z-score: 526.4 bits: 104.2 E(32554): 5.3e-23
Smith-Waterman score: 445; 42.2% identity (62.8% similar) in 180 aa overlap (32-211:16-173)
10 20 30 40 50 60
pF1KB7 APAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTV
: .::..:.:: :::.:. ..: ::.
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFR---NED---YTI
10 20 30
70 80 90 100 110 120
pF1KB7 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPG
.:..:::.:: :::: ::.:.::.:. : . :. ... ::.::::.:
CCDS10 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKH
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
:: :.::::: ::::.:: ::. :: ::::: .: .: : : .: :
CCDS10 GPEKLSEKFQRFTPFTLGKEFKEGHSYYYISHSP-QAHDNP-----------QEKRLAAD
100 110 120 130 140
190 200 210
pF1KB7 EPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
.: .: . .. ::: :. ::.:
CCDS10 DPEVRVLHSIGHSAAPRLF----PLAWTVLLLPLLLLQTP
150 160 170 180
>>CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 (201 aa)
initn: 286 init1: 172 opt: 396 Z-score: 475.8 bits: 95.0 E(32554): 3.5e-20
Smith-Waterman score: 445; 44.9% identity (65.8% similar) in 187 aa overlap (33-210:24-198)
10 20 30 40 50 60
pF1KB7 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
.: :..:::: ::::. : :. .::
CCDS10 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRG---DA---VVE
10 20 30 40
70 80 90 100 110 120
pF1KB7 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
...:::::: :::: .: :: : : ..::::. :. ::. . :..::: :. :
CCDS10 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
: ..::::.: :::::::::: ::. :::::. :.. . ::::.: : .: :.
CCDS10 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVC-CKERKSESA
110 120 130 140 150 160
190 200 210
pF1KB7 EPIFTSNNSCSSP--GG------CRLFLSTIPVLWTLLGS
.:. . ..: .: :: : :.: . .: :
CCDS10 HPVGSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL
170 180 190 200
>>CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 (193 aa)
initn: 458 init1: 172 opt: 389 Z-score: 467.8 bits: 93.5 E(32554): 9.8e-20
Smith-Waterman score: 438; 45.7% identity (67.1% similar) in 164 aa overlap (33-195:24-176)
10 20 30 40 50 60
pF1KB7 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
.: :..:::: ::::. : . .::
CCDS41 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDA------VVE
10 20 30 40
70 80 90 100 110 120
pF1KB7 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
...:::::: :::: .: :: : : ..::::. :. ::. . :..::: :. :
CCDS41 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
: ..::::.: :::::::::: ::. :::::. :.. . ::::.: : ...: :
CCDS41 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVCCKERNLPSHP
110 120 130 140 150 160
190 200 210
pF1KB7 EPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
. .:.. :
CCDS41 KEPESSQDPLEEEGSLLPALGVPIQTDKMEH
170 180 190
>>CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 (207 aa)
initn: 403 init1: 157 opt: 384 Z-score: 461.4 bits: 92.4 E(32554): 2.2e-19
Smith-Waterman score: 433; 51.1% identity (71.2% similar) in 139 aa overlap (33-170:24-151)
10 20 30 40 50 60
pF1KB7 PAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTVE
.: :..:::: ::::. : . .::
CCDS44 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDA------VVE
10 20 30 40
70 80 90 100 110 120
pF1KB7 VSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHR-QRGFKRWECNRPAAPG
...:::::: :::: .: :: : : ..::::. :. ::. . :..::: :. :
CCDS44 LGLNDYLDIVCPHYEGPGPP-EGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB7 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPTNETLYEAP
: ..::::.: :::::::::: ::. :::::. :.. . ::::.: :
CCDS44 GHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSVCCKERRARVLP
110 120 130 140 150 160
190 200 210
pF1KB7 EPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
CCDS44 RSPGGGGIPAACTGGANSDRQDGALMGEIRGSEVTLAGACPLITG
170 180 190 200
213 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:29:49 2016 done: Fri Nov 4 07:29:49 2016
Total Scan time: 2.020 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]