FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7409, 190 aa
  1>>>pF1KB7409 190 - 190 aa - 190 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1998+/-0.000623; mu= 8.1535+/- 0.038
 mean_var=167.4210+/-33.436, 0's: 0 Z-trim(118.6): 4  B-trim: 212 in 1/54
 Lambda= 0.099122
 statistics sampled from 19617 (19621) to 19617 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.868), E-opt: 0.2 (0.603), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS13648.1 RIPPLY3 gene_id:53820|Hs108|chr21      ( 190) 1383 207.9   3e-54


>>CCDS13648.1 RIPPLY3 gene_id:53820|Hs108|chr21           (190 aa)
 initn: 1383 init1: 1383 opt: 1383  Z-score: 1087.3  bits: 207.9 E(32554): 3e-54
Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)

               10        20        30        40        50        60
pF1KB7 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEPEAAAGARKARGRGCHCPGDAPWRPPPPRGPESPAPWRPWIQTPGDAELTRTGRPLEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RADQHTFGSKGAFGFQHPVRVYLPMSKRQEYLRSSGEQVLASFPVQATIDFYDDESTESA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SEAEEPEEGPPPLHLLPQEVGGRQENGPGGKGRDQGINQGQRSSGGGDHWGEGPLPQGVS
              130       140       150       160       170       180

              190
pF1KB7 SRGGKCSSSK
       ::::::::::
CCDS13 SRGGKCSSSK
              190




190 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:31:49 2016 done: Fri Nov  4 07:31:49 2016
 Total Scan time:  2.190 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]