FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7410, 384 aa
  1>>>pF1KB7410 384 - 384 aa - 384 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0246+/-0.000803; mu= 13.9334+/- 0.048
 mean_var=86.1726+/-17.503, 0's: 0 Z-trim(109.5): 35  B-trim: 0 in 0/49
 Lambda= 0.138162
 statistics sampled from 10910 (10940) to 10910 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.336), width:  16
 Scan time:  2.970

The best scores are:                                      opt bits E(32554)
CCDS7598.1 KCNK18 gene_id:338567|Hs108|chr10       ( 384) 2612 530.3 1.1e-150


>>CCDS7598.1 KCNK18 gene_id:338567|Hs108|chr10            (384 aa)
 initn: 2612 init1: 2612 opt: 2612  Z-score: 2818.6  bits: 530.3 E(32554): 1.1e-150
Smith-Waterman score: 2612; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)

               10        20        30        40        50        60
pF1KB7 MEVSGHPQARRCCPEALGKLFPGLCFLCFLVTYALVGAVVFSAIEDGQVLVAADDGEFEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEVSGHPQARRCCPEALGKLFPGLCFLCFLVTYALVGAVVFSAIEDGQVLVAADDGEFEK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FLEELCRILNCSETVVEDRKQDLQGHLQKVKPQWFNRTTHWSFLSSLFFCCTVFSTVGYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FLEELCRILNCSETVVEDRKQDLQGHLQKVKPQWFNRTTHWSFLSSLFFCCTVFSTVGYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 YIYPVTRLGKYLCMLYALFGIPLMFLVLTDTGDILATILSTSYNRFRKFPFFTRPLLSKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YIYPVTRLGKYLCMLYALFGIPLMFLVLTDTGDILATILSTSYNRFRKFPFFTRPLLSKW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 CPKSLFKKKPDPKPADEAVPQIIISAEELPGPKLGTCPSRPSCSMELFERSHALEKQNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 CPKSLFKKKPDPKPADEAVPQIIISAEELPGPKLGTCPSRPSCSMELFERSHALEKQNTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 QLPPQAMERSNSCPELVLGRLSYSIISNLDEVGQQVERLDIPLPIIALIVFAYISCAAAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QLPPQAMERSNSCPELVLGRLSYSIISNLDEVGQQVERLDIPLPIIALIVFAYISCAAAI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LPFWETQLDFENAFYFCFVTLTTIGFGDTVLEHPNFFLFFSIYIIVGMEIVFIAFKLVQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPFWETQLDFENAFYFCFVTLTTIGFGDTVLEHPNFFLFFSIYIIVGMEIVFIAFKLVQN
              310       320       330       340       350       360

              370       380    
pF1KB7 RLIDIYKNVMLFFAKGKFYHLVKK
       ::::::::::::::::::::::::
CCDS75 RLIDIYKNVMLFFAKGKFYHLVKK
              370       380    




384 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:32:23 2016 done: Fri Nov  4 07:32:23 2016
 Total Scan time:  2.970 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]