FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7417, 365 aa
  1>>>pF1KB7417 365 - 365 aa - 365 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0645+/-0.000921; mu= 12.4427+/- 0.055
 mean_var=78.8617+/-16.298, 0's: 0 Z-trim(106.6): 71  B-trim: 0 in 0/50
 Lambda= 0.144425
 statistics sampled from 9033 (9105) to 9033 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.662), E-opt: 0.2 (0.28), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS44738.1 NXPE2 gene_id:120406|Hs108|chr11       ( 559) 2072 441.4 8.6e-124
CCDS41718.1 NXPE4 gene_id:54827|Hs108|chr11        ( 544) 1357 292.5 5.9e-79
CCDS8372.1 NXPE1 gene_id:120400|Hs108|chr11        ( 405)  819 180.3 2.5e-45
CCDS2945.1 NXPE3 gene_id:91775|Hs108|chr3          ( 559)  486 111.0 2.6e-24


>>CCDS44738.1 NXPE2 gene_id:120406|Hs108|chr11            (559 aa)
 initn: 2072 init1: 2072 opt: 2072  Z-score: 2335.9  bits: 441.4 E(32554): 8.6e-124
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB7 MVEKILIHRILTLFPNAIARKLLLMLTFILIFWIIYLASKDHTKFSFNLENHIILNQGNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVEKILIHRILTLFPNAIARKLLLMLTFILIFWIIYLASKDHTKFSFNLENHIILNQGNI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FKKYSHSETPLCPAVSPKETELRIKDIMEKLDQQIPPRPFTHVNTTTSATHSTATILNPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FKKYSHSETPLCPAVSPKETELRIKDIMEKLDQQIPPRPFTHVNTTTSATHSTATILNPQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 DTYCRGDQLDILLEVRDHLGHRKQYGGDFLRARMYSTALMAGASGKVTDFNNGTYLVSFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DTYCRGDQLDILLEVRDHLGHRKQYGGDFLRARMYSTALMAGASGKVTDFNNGTYLVSFT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LFWEGQVSLSLLLIHPSEGVSALWRARNQGCDRIIFTGLFANRSSNVFTECGLTLNTNAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LFWEGQVSLSLLLIHPSEGVSALWRARNQGCDRIIFTGLFANRSSNVFTECGLTLNTNAE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LCQYMDDRDQEAFYCVRPQHMPCEALTHMTTRTRNISYLSKEEWRLFHRSNIGVEMMKNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LCQYMDDRDQEAFYCVRPQHMPCEALTHMTTRTRNISYLSKEEWRLFHRSNIGVEMMKNF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 TPIEVIPCPALFYFIFRDSLTLSPRLECSGMISAHCNLCLPGSSDSPDSASHVAGITSVQ
       ::::::::                                                    
CCDS44 TPIEVIPCNKSENIKKNCQIGMKTPFPSGYTLKKMWITAFCKQIKFNETKNINDCLERKL
              310       320       330       340       350       360

>>CCDS41718.1 NXPE4 gene_id:54827|Hs108|chr11             (544 aa)
 initn: 1357 init1: 1357 opt: 1357  Z-score: 1531.0  bits: 292.5 E(32554): 5.9e-79
Smith-Waterman score: 1357; 71.8% identity (82.8% similar) in 291 aa overlap (18-308:6-296)

               10        20        30        40        50        60
pF1KB7 MVEKILIHRILTLFPNAIARKLLLMLTFILIFWIIYLASKDHTKFSFNLENHIILNQGNI
                        :  : :: : :::  :::. . .. ::    :.  : :.  : 
CCDS41             MKISMINYKSLLALLFILASWIIFTVFQNSTKVWSALNLSISLHYWNN
                           10        20        30        40        

               70        80        90       100       110       120
pF1KB7 FKKYSHSETPLCPAVSPKETELRIKDIMEKLDQQIPPRPFTHVNTTTSATHSTATILNPQ
         :    .:::       :::::::.:.:::::::::::::::::::::::::::::::.
CCDS41 STKSLFPKTPLISLKPLTETELRIKEIIEKLDQQIPPRPFTHVNTTTSATHSTATILNPR
       50        60        70        80        90       100        

              130       140       150       160       170       180
pF1KB7 DTYCRGDQLDILLEVRDHLGHRKQYGGDFLRARMYSTALMAGASGKVTDFNNGTYLVSFT
       ::::::::: ::::::::::.::::::::::::: : :::::::::::::::::::::::
CCDS41 DTYCRGDQLHILLEVRDHLGRRKQYGGDFLRARMSSPALMAGASGKVTDFNNGTYLVSFT
      110       120       130       140       150       160        

              190       200       210       220       230       240
pF1KB7 LFWEGQVSLSLLLIHPSEGVSALWRARNQGCDRIIFTGLFANRSSNVFTECGLTLNTNAE
       :::::::::::::::::::::::: ::::: ::.:::: :.: .:.: .:::: ::::::
CCDS41 LFWEGQVSLSLLLIHPSEGVSALWSARNQGYDRVIFTGQFVNGTSQVHSECGLILNTNAE
      170       180       190       200       210       220        

              250       260       270       280       290       300
pF1KB7 LCQYMDDRDQEAFYCVRPQHMPCEALTHMTTRTRNISYLSKEEWRLFHRSNIGVEMMKNF
       ::::.:.::::.::::::::::: ::::: ......:::::.:  ::.:::.:::.:..:
CCDS41 LCQYLDNRDQEGFYCVRPQHMPCAALTHMYSKNKKVSYLSKQEKSLFERSNVGVEIMEKF
      230       240       250       260       270       280        

              310       320       330       340       350       360
pF1KB7 TPIEVIPCPALFYFIFRDSLTLSPRLECSGMISAHCNLCLPGSSDSPDSASHVAGITSVQ
       . : :  :                                                    
CCDS41 NTISVSKCNKETVAMKEKCKFGMTSTIPSGHVWRNTWNPVSCSLATVKMKECLRGKLIYL
      290       300       310       320       330       340        

>>CCDS8372.1 NXPE1 gene_id:120400|Hs108|chr11             (405 aa)
 initn: 794 init1: 794 opt: 819  Z-score: 927.2  bits: 180.3 E(32554): 2.5e-45
Smith-Waterman score: 819; 76.8% identity (89.7% similar) in 155 aa overlap (154-308:1-155)

           130       140       150       160       170       180   
pF1KB7 CRGDQLDILLEVRDHLGHRKQYGGDFLRARMYSTALMAGASGKVTDFNNGTYLVSFTLFW
                                     : : :: ::::::: :::::::::::::::
CCDS83                               MSSPALTAGASGKVMDFNNGTYLVSFTLFW
                                             10        20        30

           190       200       210       220       230       240   
pF1KB7 EGQVSLSLLLIHPSEGVSALWRARNQGCDRIIFTGLFANRSSNVFTECGLTLNTNAELCQ
       ::::::::::::::::.:::::::::: :.::: : :.: .:.::::::::::.:::::.
CCDS83 EGQVSLSLLLIHPSEGASALWRARNQGYDKIIFKGKFVNGTSHVFTECGLTLNSNAELCE
               40        50        60        70        80        90

           250       260       270       280       290       300   
pF1KB7 YMDDRDQEAFYCVRPQHMPCEALTHMTTRTRNISYLSKEEWRLFHRSNIGVEMMKNFTPI
       :.::::::::::..::::::::::.::::.:..:::. .:  :::::..::::::.   :
CCDS83 YLDDRDQEAFYCMKPQHMPCEALTYMTTRNREVSYLTDKENSLFHRSKVGVEMMKDRKHI
              100       110       120       130       140       150

           310       320       330       340       350       360   
pF1KB7 EVIPCPALFYFIFRDSLTLSPRLECSGMISAHCNLCLPGSSDSPDSASHVAGITSVQRHT
       .:  :                                                       
CCDS83 DVTNCNKREKIEETCQVGMKPPVPGGYTLQGKWITTFCNQVQLDTIKINGCLKGKLIYLL
              160       170       180       190       200       210

>>CCDS2945.1 NXPE3 gene_id:91775|Hs108|chr3               (559 aa)
 initn: 455 init1: 430 opt: 486  Z-score: 550.0  bits: 111.0 E(32554): 2.6e-24
Smith-Waterman score: 486; 31.1% identity (62.2% similar) in 299 aa overlap (22-307:15-303)

               10        20        30        40        50        60
pF1KB7 MVEKILIHRILTLFPNAIARKLLLMLTFILIFWIIYLASKDHTKFSFNLENHIILNQGNI
                            : .... .:.. .  .   ::   : ..    : ..:..
CCDS29        MWTNFFKLRLFCCLLAVLMVVVLVINVTQVEYLDHETVSATF----IDSSGQF
                      10        20        30        40             

                 70            80        90          100       110 
pF1KB7 FKKYSH--SETPLC----PAVSPKETELRIKDIMEKLDQQIP---PRPFTHVNTTTSATH
        ..     :..: :     ..: .: ...  ...  : .:.:   : ::..   .:. . 
CCDS29 VSSQVTGISRNPYCGYDQQTLSSQE-RMEEDSLLAALHRQVPDVGPVPFVK---STDPSS
      50        60        70         80        90          100     

             120       130       140       150       160       170 
pF1KB7 STATILNPQDTYCRGDQLDILLEVRDHLGHRKQYGGDFLRARMYSTALMAGASGKVTDFN
       :  .:::    .  :.::..:..:.:   . :.::::.:.::..:  :.::: :.:.:..
CCDS29 SYFVILNSAAFFKVGSQLEVLVHVQDFQRKPKKYGGDYLQARIHSLKLQAGAVGRVVDYQ
         110       120       130       140       150       160     

             180       190       200       210       220       230 
pF1KB7 NGTYLVSFTLFWEGQVSLSLLLIHPSEGVSALWRARNQGCDRIIFTGLFANRSSNVFTEC
       :: : : :::.: :.:..:. :.:::::. .: : ...  ::. : .:: .   .  :::
CCDS29 NGFYKVFFTLLWPGKVKVSVSLVHPSEGIRVLQRLQEDKPDRVYFKSLFRSGRISETTEC
         170       180       190       200       210       220     

             240       250       260        270       280       290
pF1KB7 GLTLNTNAELCQYMDDRDQEAFYCVRPQHMPCEA-LTHMTTRTRNISYLSKEEWRLFHRS
       .. :  :  ::.. :    : ..: .:...:: . .::.  .   .. :       : .:
CCDS29 NVCLPGNLPLCNFTDLYTGEPWFCFKPKKLPCSSRITHF--KGGYLKGLLTAAESAFFQS
         230       240       250       260         270       280   

              300          310       320       330       340       
pF1KB7 NIGVEMMKNFT-P--IEVIPCPALFYFIFRDSLTLSPRLECSGMISAHCNLCLPGSSDSP
       .....:  : . :  . :::                                        
CCDS29 GVNIKMPVNSSGPDWVTVIPRRIKETNSLELSQGSGTFPSGYYYKDQWRPRKFKMRQFND
           290       300       310       320       330       340   




365 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:36:34 2016 done: Fri Nov  4 07:36:34 2016
 Total Scan time:  2.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]