FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7418, 377 aa
  1>>>pF1KB7418 377 - 377 aa - 377 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2909+/-0.000812; mu= 5.8373+/- 0.049
 mean_var=222.5082+/-45.438, 0's: 0 Z-trim(116.2): 42  B-trim: 761 in 1/54
 Lambda= 0.085981
 statistics sampled from 16721 (16763) to 16721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.515), width:  16
 Scan time:  3.140

The best scores are:                                      opt bits E(32554)
CCDS33633.1 RNF215 gene_id:200312|Hs108|chr22      ( 377) 2569 330.8 1.3e-90


>>CCDS33633.1 RNF215 gene_id:200312|Hs108|chr22           (377 aa)
 initn: 2569 init1: 2569 opt: 2569  Z-score: 1740.5  bits: 330.8 E(32554): 1.3e-90
Smith-Waterman score: 2569; 100.0% identity (100.0% similar) in 377 aa overlap (1-377:1-377)

               10        20        30        40        50        60
pF1KB7 MGPAARPALRSPPPPPPPPPSPLLLLLPLLPLWLGLAGPGAAADGSEPAAGAGRGGARAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MGPAARPALRSPPPPPPPPPSPLLLLLPLLPLWLGLAGPGAAADGSEPAAGAGRGGARAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RVDVRLPRQDALVLEGVRIGSEADPAPLLGGRLLLMDIVDAEQEAPVEGWIAVAYVGKEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RVDVRLPRQDALVLEGVRIGSEADPAPLLGGRLLLMDIVDAEQEAPVEGWIAVAYVGKEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AAQFHQENKGSGPQAYPKALVQQMRRALFLGASALLLLILNHNVVRELDISQLLLRPVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AAQFHQENKGSGPQAYPKALVQQMRRALFLGASALLLLILNHNVVRELDISQLLLRPVIV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LHYSSNVTKLLDALLQRTQATAEITSGESLSANIEWKLTLWTTCGLSKDGYGGWQDLVCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LHYSSNVTKLLDALLQRTQATAEITSGESLSANIEWKLTLWTTCGLSKDGYGGWQDLVCL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 GGSRAQEQKPLQQLWNAILLVAMLLCTGLVVQAQRQASRQSQRELGGQVDLFKRRVVRRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GGSRAQEQKPLQQLWNAILLVAMLLCTGLVVQAQRQASRQSQRELGGQVDLFKRRVVRRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 ASLKTRRCRLSRAAQGLPDPGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASLKTRRCRLSRAAQGLPDPGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQ
              310       320       330       340       350       360

              370       
pF1KB7 TCPLCKFNVLGNRYSDD
       :::::::::::::::::
CCDS33 TCPLCKFNVLGNRYSDD
              370       




377 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:36:59 2016 done: Fri Nov  4 07:36:59 2016
 Total Scan time:  3.140 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]