FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7420, 269 aa
  1>>>pF1KB7420 269 - 269 aa - 269 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0279+/-0.000923; mu= 11.2125+/- 0.055
 mean_var=86.8431+/-17.365, 0's: 0 Z-trim(107.4): 59  B-trim: 65 in 1/50
 Lambda= 0.137628
 statistics sampled from 9527 (9578) to 9527 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.667), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS41883.1 SIAH3 gene_id:283514|Hs108|chr13       ( 269) 1908 388.7 2.4e-108
CCDS3152.1 SIAH2 gene_id:6478|Hs108|chr3           ( 324)  660 140.9 1.1e-33
CCDS10735.1 SIAH1 gene_id:6477|Hs108|chr16         ( 282)  636 136.1 2.6e-32
CCDS32444.1 SIAH1 gene_id:6477|Hs108|chr16         ( 313)  636 136.1 2.9e-32


>>CCDS41883.1 SIAH3 gene_id:283514|Hs108|chr13            (269 aa)
 initn: 1908 init1: 1908 opt: 1908  Z-score: 2058.8  bits: 388.7 E(32554): 2.4e-108
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 269 aa overlap (1-269:1-269)

               10        20        30        40        50        60
pF1KB7 MLFFTQCFGAVLDLIHLRFQHYKAKRVFSAAGQLVCVVNPTHNLKYVSSRRAVTQSAPEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLFFTQCFGAVLDLIHLRFQHYKAKRVFSAAGQLVCVVNPTHNLKYVSSRRAVTQSAPEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQWEGRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHANPVTPCLCMCPLFSCQWEGRL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EVVVPHLRQIHRVDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EVVVPHLRQIHRVDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQERHEGH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 PQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLVLNTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLVLNTS
              190       200       210       220       230       240

              250       260         
pF1KB7 LAQLFSDNGSLAIGIAITATEVLPSEAEM
       :::::::::::::::::::::::::::::
CCDS41 LAQLFSDNGSLAIGIAITATEVLPSEAEM
              250       260         

>>CCDS3152.1 SIAH2 gene_id:6478|Hs108|chr3                (324 aa)
 initn: 634 init1: 536 opt: 660  Z-score: 718.3  bits: 140.9 E(32554): 1.1e-33
Smith-Waterman score: 660; 54.1% identity (79.7% similar) in 172 aa overlap (90-258:149-320)

      60        70        80        90       100         110       
pF1KB7 QGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHAN--PVTPCLCMCPLFSCQWE
                                     ::: :   : .     :  : ::  ::.:.
CCDS31 TPSIRNLAMEKVASAVLFPCKYATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQ
      120       130       140       150       160       170        

       120       130        140       150       160       170      
pF1KB7 GRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQER
       : ::.:. :: . :. .  ::: .:::::::..::. .::..:.::.::::.:::.:::.
CCDS31 GSLEAVMSHLMHAHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGHHFMLVLEKQEK
      180       190       200       210       220       230        

        180       190       200       210       220       230      
pF1KB7 HEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLV
       .::: :::: ..::::  ::. :.:::::: :.::: :::::::. . : ..: ..::::
CCDS31 YEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEATPRSIHDGVAAAIMNSDCLV
      240       250       260       270       280       290        

        240       250       260         
pF1KB7 LNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM
       ..:..:.::.:::.:.:...:.           
CCDS31 FDTAIAHLFADNGNLGINVTISTCCP       
      300       310       320           

>>CCDS10735.1 SIAH1 gene_id:6477|Hs108|chr16              (282 aa)
 initn: 623 init1: 520 opt: 636  Z-score: 693.5  bits: 136.1 E(32554): 2.6e-32
Smith-Waterman score: 636; 52.3% identity (79.7% similar) in 172 aa overlap (90-258:109-280)

      60        70        80        90       100         110       
pF1KB7 QGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHAN--PVTPCLCMCPLFSCQWE
                                     : : : . : .     :  : ::  ::.:.
CCDS10 LGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQ
       80        90       100       110       120       130        

       120       130        140       150       160       170      
pF1KB7 GRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQER
       : :..:.::: . :. .  ::: .:::::::..::. .::..:.::.: ::.:::.:::.
CCDS10 GSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEK
      140       150       160       170       180       190        

        180       190       200       210       220       230      
pF1KB7 HEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLV
       ..:: :::: ..::::  ::. :.:::::: ..::: :::::::. : . ..: ..::::
CCDS10 YDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLV
      200       210       220       230       240       250        

        240       250       260         
pF1KB7 LNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM
       ..::.::::..::.:.:...:.           
CCDS10 FDTSIAQLFAENGNLGINVTISMC         
      260       270       280           

>>CCDS32444.1 SIAH1 gene_id:6477|Hs108|chr16              (313 aa)
 initn: 623 init1: 520 opt: 636  Z-score: 692.8  bits: 136.1 E(32554): 2.9e-32
Smith-Waterman score: 636; 52.3% identity (79.7% similar) in 172 aa overlap (90-258:140-311)

      60        70        80        90       100         110       
pF1KB7 QGSFHPHHLSHHHCHHRHHHHLRHHAHPHHLHHQEAGLHAN--PVTPCLCMCPLFSCQWE
                                     : : : . : .     :  : ::  ::.:.
CCDS32 LGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKADHEELCEFRPYSCPCPGASCKWQ
     110       120       130       140       150       160         

       120       130        140       150       160       170      
pF1KB7 GRLEVVVPHLRQIHR-VDILQGAEIVFLATDMHLPAPADWIIMHSCLGHHFLLVLRKQER
       : :..:.::: . :. .  ::: .:::::::..::. .::..:.::.: ::.:::.:::.
CCDS32 GSLDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEK
     170       180       190       200       210       220         

        180       190       200       210       220       230      
pF1KB7 HEGHPQFFATMMLIGTPTQADCFTYRLELNRNHRRLKWEATPRSVLECVDSVITDGDCLV
       ..:: :::: ..::::  ::. :.:::::: ..::: :::::::. : . ..: ..::::
CCDS32 YDGHQQFFAIVQLIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLV
     230       240       250       260       270       280         

        240       250       260         
pF1KB7 LNTSLAQLFSDNGSLAIGIAITATEVLPSEAEM
       ..::.::::..::.:.:...:.           
CCDS32 FDTSIAQLFAENGNLGINVTISMC         
     290       300       310            




269 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:38:10 2016 done: Fri Nov  4 07:38:11 2016
 Total Scan time:  2.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]