Result of FASTA (ccds) for
pF1KB7422
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7422, 136 aa
1>>>pF1KB7422 136 - 136 aa - 136 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8128+/-0.000758; mu= 14.8901+/- 0.046
mean_var=67.6248+/-13.575, 0's: 0 Z-trim(108.8): 23 B-trim: 219 in 1/48
Lambda= 0.155963
statistics sampled from 10442 (10464) to 10442 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.321), width: 16
Scan time: 1.730
The best scores are: opt bits E(32554)
CCDS30850.1 HIST2H3A gene_id:333932|Hs108|chr1 ( 136) 862 201.9 9.8e-53
CCDS30848.1 HIST2H3C gene_id:126961|Hs108|chr1 ( 136) 862 201.9 9.8e-53
CCDS41388.1 HIST2H3D gene_id:653604|Hs108|chr1 ( 136) 862 201.9 9.8e-53
CCDS4570.1 HIST1H3A gene_id:8350|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4638.1 HIST1H3J gene_id:8356|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4636.1 HIST1H3I gene_id:8354|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4576.1 HIST1H3C gene_id:8352|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4590.1 HIST1H3D gene_id:8351|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4596.1 HIST1H3E gene_id:8353|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4600.1 HIST1H3F gene_id:8968|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4573.1 HIST1H3B gene_id:8358|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4627.1 HIST1H3H gene_id:8357|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS4602.1 HIST1H3G gene_id:8355|Hs108|chr6 ( 136) 856 200.6 2.5e-52
CCDS11729.1 H3F3B gene_id:3021|Hs108|chr17 ( 136) 843 197.7 1.9e-51
CCDS1550.1 H3F3A gene_id:3020|Hs108|chr1 ( 136) 843 197.7 1.9e-51
CCDS1572.1 HIST3H3 gene_id:8290|Hs108|chr1 ( 136) 838 196.5 4.2e-51
CCDS31769.1 H3F3C gene_id:440093|Hs108|chr12 ( 135) 797 187.3 2.5e-48
CCDS1729.1 CENPA gene_id:1058|Hs108|chr2 ( 140) 376 92.6 8.3e-20
>>CCDS30850.1 HIST2H3A gene_id:333932|Hs108|chr1 (136 aa)
initn: 862 init1: 862 opt: 862 Z-score: 1060.2 bits: 201.9 E(32554): 9.8e-53
Smith-Waterman score: 862; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS30 MPKDIQLARRIRGERA
130
>>CCDS30848.1 HIST2H3C gene_id:126961|Hs108|chr1 (136 aa)
initn: 862 init1: 862 opt: 862 Z-score: 1060.2 bits: 201.9 E(32554): 9.8e-53
Smith-Waterman score: 862; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS30 MPKDIQLARRIRGERA
130
>>CCDS41388.1 HIST2H3D gene_id:653604|Hs108|chr1 (136 aa)
initn: 862 init1: 862 opt: 862 Z-score: 1060.2 bits: 201.9 E(32554): 9.8e-53
Smith-Waterman score: 862; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS41 MPKDIQLARRIRGERA
130
>>CCDS4570.1 HIST1H3A gene_id:8350|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
>>CCDS4638.1 HIST1H3J gene_id:8356|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS46 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS46 MPKDIQLARRIRGERA
130
>>CCDS4636.1 HIST1H3I gene_id:8354|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS46 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS46 MPKDIQLARRIRGERA
130
>>CCDS4576.1 HIST1H3C gene_id:8352|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
>>CCDS4590.1 HIST1H3D gene_id:8351|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
>>CCDS4596.1 HIST1H3E gene_id:8353|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS45 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS45 MPKDIQLARRIRGERA
130
>>CCDS4600.1 HIST1H3F gene_id:8968|Hs108|chr6 (136 aa)
initn: 856 init1: 856 opt: 856 Z-score: 1052.9 bits: 200.6 E(32554): 2.5e-52
Smith-Waterman score: 856; 99.3% identity (99.3% similar) in 136 aa overlap (1-136:1-136)
10 20 30 40 50 60
pF1KB7 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS46 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
70 80 90 100 110 120
130
pF1KB7 MPKDIQLARRIRGERA
::::::::::::::::
CCDS46 MPKDIQLARRIRGERA
130
136 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 07:39:22 2016 done: Fri Nov 4 07:39:23 2016
Total Scan time: 1.730 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]