FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7429, 299 aa
  1>>>pF1KB7429 299 - 299 aa - 299 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2715+/-0.000671; mu= 15.5620+/- 0.040
 mean_var=62.8215+/-12.396, 0's: 0 Z-trim(110.1): 12  B-trim: 0 in 0/50
 Lambda= 0.161816
 statistics sampled from 11373 (11378) to 11373 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.35), width:  16
 Scan time:  2.680

The best scores are:                                      opt bits E(32554)
CCDS42530.1 YJEFN3 gene_id:374887|Hs108|chr19      ( 299) 2015 478.6 2.5e-135
CCDS54236.1 YJEFN3 gene_id:374887|Hs108|chr19      ( 249) 1537 366.9 8.5e-102
CCDS1145.1 NAXE gene_id:128240|Hs108|chr1          ( 288)  773 188.6 4.7e-48


>>CCDS42530.1 YJEFN3 gene_id:374887|Hs108|chr19           (299 aa)
 initn: 2015 init1: 2015 opt: 2015  Z-score: 2542.9  bits: 478.6 E(32554): 2.5e-135
Smith-Waterman score: 2015; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)

               10        20        30        40        50        60
pF1KB7 MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IWNAGPVCQSTAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 IWNAGPVCQSTAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD
              190       200       210       220       230       240

              250       260       270       280       290         
pF1KB7 SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL
              250       260       270       280       290         

>>CCDS54236.1 YJEFN3 gene_id:374887|Hs108|chr19           (249 aa)
 initn: 1537 init1: 1537 opt: 1537  Z-score: 1941.1  bits: 366.9 E(32554): 8.5e-102
Smith-Waterman score: 1558; 83.3% identity (83.3% similar) in 299 aa overlap (1-299:1-249)

               10        20        30        40        50        60
pF1KB7 MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQ
       :::::::::::::::::::                                         
CCDS54 MSSAAGPDPSEAPEERHFL-----------------------------------------
               10                                                  

               70        80        90       100       110       120
pF1KB7 IWNAGPVCQSTAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ---------STAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTV
               20        30        40        50        60        70

              130       140       150       160       170       180
pF1KB7 LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LVVCGPEQNGAVGLVCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPT
               80        90       100       110       120       130

              190       200       210       220       230       240
pF1KB7 EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EVQLINEAYGLVVDAVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSD
              140       150       160       170       180       190

              250       260       270       280       290         
pF1KB7 SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL
              200       210       220       230       240         

>>CCDS1145.1 NAXE gene_id:128240|Hs108|chr1               (288 aa)
 initn: 741 init1: 455 opt: 773  Z-score: 976.2  bits: 188.6 E(32554): 4.7e-48
Smith-Waterman score: 773; 47.5% identity (74.9% similar) in 255 aa overlap (47-299:39-287)

         20        30        40        50        60          70    
pF1KB7 HFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQIWNAGPVCQ--STAEA
                                     .: .. ::  :  ..  :. : .  :  ::
CCDS11 GLGLLVAGSRVPRIKSQTIACRSGPTWWGPQRLNSGGR--WDSEVM-ASTVVKYLSQEEA
       10        20        30        40          50         60     

           80        90       100       110       120       130    
pF1KB7 AALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTVLVVCGPEQNGAVGL
        :...::...:.:. .::.:: : . :.:..::.:  ..::.  ::::.::: .::. ::
CCDS11 QAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNNGGDGL
          70        80        90       100       110       120     

          140       150       160       170       180       190    
pF1KB7 VCARHLRVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPTEVQLINEAYGLVVD
       ::::::..: :::::.:: :    :   :.:::.:::::::. .:.: . :.: : ::::
CCDS11 VCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELYELVVD
         130       140       150       160       170       180     

          200       210       220       230       240       250    
pF1KB7 AVLGPGVEPGEVGGPCTRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLRPDVLVSLA
       :..: . . :.:  :    :..:: :..:..:.:::::::.: :. .  :..::.:.::.
CCDS11 AIFGFSFK-GDVREPFHSILSVLKGLTVPIASIDIPSGWDVEKGNAG--GIQPDLLISLT
         190        200       210       220       230         240  

          260       270       280       290          
pF1KB7 APKRCAGRFSGRHHFVAGRFVPDDVRRKFALRLPGYTGTDCVAAL 
       :::. : .:.::.:...:::::  ...:. : :: :  :.::  : 
CCDS11 APKKSATQFTGRYHYLGGRFVPPALEKKYQLNLPPYPDTECVYRLQ
            250       260       270       280        




299 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:42:57 2016 done: Fri Nov  4 07:42:57 2016
 Total Scan time:  2.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]