Result of FASTA (omim) for pF1KB7431
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7431, 308 aa
  1>>>pF1KB7431 308 - 308 aa - 308 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0179+/-0.000305; mu= 13.0323+/- 0.019
 mean_var=85.7853+/-16.703, 0's: 0 Z-trim(118.0): 30  B-trim: 64 in 1/55
 Lambda= 0.138474
 statistics sampled from 30402 (30432) to 30402 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.357), width:  16
 Scan time:  7.980

The best scores are:                                      opt bits E(85289)
NP_003299 (OMIM: 480100) testis-specific Y-encoded ( 308) 2009 410.7 1.9e-114
NP_001184171 (OMIM: 480100) testis-specific Y-enco ( 294) 1770 363.0 4.2e-100
XP_016885553 (OMIM: 480100) PREDICTED: testis-spec ( 288) 1420 293.0 4.7e-79
NP_001307893 (OMIM: 480100) testis-specific Y-enco ( 221) 1292 267.4 1.9e-71
NP_003300 (OMIM: 604714,608800) testis-specific Y- ( 437)  666 142.5 1.5e-33
NP_071400 (OMIM: 300564) testis-specific Y-encoded ( 693)  580 125.4 3.2e-28
XP_006724655 (OMIM: 300564) PREDICTED: testis-spec ( 694)  580 125.4 3.2e-28
NP_277047 (OMIM: 614721) testis-specific Y-encoded ( 417)  552 119.7   1e-26
NP_001234930 (OMIM: 600960) protein SET isoform 4  ( 266)  346 78.4 1.7e-14
NP_001116293 (OMIM: 600960) protein SET isoform 1  ( 290)  341 77.5 3.6e-14
XP_016870503 (OMIM: 600960) PREDICTED: protein SET ( 309)  341 77.5 3.8e-14
XP_016870504 (OMIM: 600960) PREDICTED: protein SET ( 309)  341 77.5 3.8e-14
XP_016870502 (OMIM: 600960) PREDICTED: protein SET ( 309)  341 77.5 3.8e-14
NP_001234929 (OMIM: 600960) protein SET isoform 3  ( 268)  323 73.9 4.1e-13
NP_003002 (OMIM: 600960) protein SET isoform 2 [Ho ( 277)  323 73.9 4.2e-13
XP_016870505 (OMIM: 600960) PREDICTED: protein SET ( 296)  323 73.9 4.5e-13
XP_016885216 (OMIM: 300564) PREDICTED: testis-spec ( 737)  293 68.1 6.1e-11
XP_016885215 (OMIM: 300564) PREDICTED: testis-spec ( 738)  293 68.1 6.1e-11
NP_004529 (OMIM: 300117) nucleosome assembly prote ( 506)  160 41.4  0.0044


>>NP_003299 (OMIM: 480100) testis-specific Y-encoded pro  (308 aa)
 initn: 2009 init1: 2009 opt: 2009  Z-score: 2175.8  bits: 410.7 E(85289): 1.9e-114
Smith-Waterman score: 2009; 98.7% identity (98.7% similar) in 308 aa overlap (1-308:1-308)

               10        20        30        40        50        60
pF1KB7 MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_003 MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_003 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPD
       ::::::::: :::: :::::::::::::::::::::::::::::::::::::::::::::
NP_003 LSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET
              250       260       270       280       290       300

               
pF1KB7 SGDSQLLS
       ::::::::
NP_003 SGDSQLLS
               

>>NP_001184171 (OMIM: 480100) testis-specific Y-encoded   (294 aa)
 initn: 1770 init1: 1770 opt: 1770  Z-score: 1918.1  bits: 363.0 E(85289): 4.2e-100
Smith-Waterman score: 1770; 98.5% identity (98.5% similar) in 274 aa overlap (1-274:1-274)

               10        20        30        40        50        60
pF1KB7 MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
NP_001 MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_001 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPD
       ::::::::: :::: :::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET
       ::::::::::::::::::::::::::::::::::                          
NP_001 YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAESPDRSYVRTCGAIPCNTTRG      
              250       260       270       280       290          

               
pF1KB7 SGDSQLLS

>>XP_016885553 (OMIM: 480100) PREDICTED: testis-specific  (288 aa)
 initn: 1418 init1: 1418 opt: 1420  Z-score: 1540.3  bits: 293.0 E(85289): 4.7e-79
Smith-Waterman score: 1420; 92.2% identity (93.4% similar) in 243 aa overlap (1-239:1-243)

               10        20        30        40        50        60
pF1KB7 MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
       :::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::
XP_016 MRPEGSLTYRVPERLRQGFCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_016 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESAPEELLAVQVELE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
              130       140       150       160       170       180

              190       200       210       220           230      
pF1KB7 LSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNIT----EYRASHSTPIE
       ::::::::: :::: ::::::::::::::::::::::::::::::      . :    ..
XP_016 LSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITGLLIPLQLSGIRIMK
              190       200       210       220       230       240

        240       250       260       270       280       290      
pF1KB7 WYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEE
       : :                                                         
XP_016 WRPIAADTTTAALTSSTGSLTTTSQDLTRLLRSYVRTCGAIPCNTTRG            
              250       260       270       280                    

>>NP_001307893 (OMIM: 480100) testis-specific Y-encoded   (221 aa)
 initn: 1292 init1: 1292 opt: 1292  Z-score: 1403.8  bits: 267.4 E(85289): 1.9e-71
Smith-Waterman score: 1296; 70.8% identity (70.8% similar) in 308 aa overlap (1-308:1-221)

               10        20        30        40        50        60
pF1KB7 MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRMEAVQEGAAGVESEQAALG
       :::::::::::::::::: :::::::::::                              
NP_001 MRPEGSLTYRVPERLRQGFCGVGRAAQALV------------------------------
               10        20        30                              

               70        80        90       100       110       120
pF1KB7 EEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELE
                                                                :::
NP_001 ---------------------------------------------------------ELE
                                                                   

              130       140       150       160       170       180
pF1KB7 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDM
            40        50        60        70        80        90   

              190       200       210       220       230       240
pF1KB7 LSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPD
       ::::::::: :::: :::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSYMVSLEVGEEKHPVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPD
           100       110       120       130       140       150   

              250       260       270       280       290       300
pF1KB7 YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTET
           160       170       180       190       200       210   

               
pF1KB7 SGDSQLLS
       ::::::::
NP_001 SGDSQLLS
           220 

>>NP_003300 (OMIM: 604714,608800) testis-specific Y-enco  (437 aa)
 initn: 626 init1: 626 opt: 666  Z-score: 723.5  bits: 142.5 E(85289): 1.5e-33
Smith-Waterman score: 666; 41.1% identity (68.4% similar) in 275 aa overlap (20-288:135-408)

                          10        20        30        40         
pF1KB7            MRPEGSLTYRVPERLRQGSCGVGRAAQALVCASAKEGTAFRM-EAVQEG
                                     ::. :.:. :. ..  :.   .  . .  .
NP_003 AEGLAAASVVMAADRSLKKGVQGGEKALEICGAQRSASELTAGAEAEAEEVKTGKCATVS
          110       120       130       140       150       160    

       50        60        70        80           90         100   
pF1KB7 AAGVESEQAALGEEAVLLLDDIMAEVEVVAEE--EGL-VERREEAQRAQQAVP--GPGPM
       :: .: :.: . .:. :   ..: :   : :.  ::  .:  :: .  ..:    :: :.
NP_003 AAVAERESAEVVKEG-LAEKEVMEEQMEVEEQPPEGEEIEVAEEDRLEEEAREEEGPWPL
          170        180       190       200       210       220   

           110       120       130       140       150       160   
pF1KB7 TPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVI
            .. : :.:.::. ::::: .::.. ..:. : :. .:.::. .::..:::: ...
NP_003 HEALRMDPLEAIQLELDTVNAQADRAFQQLEHKFGRMRRHYLERRNYIIQNIPGFWMTAF
           230       240       250       260       270       280   

           170       180       190       200       210       220   
pF1KB7 ANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVN
        ::::.::.:  .: .:: :...:::.: .:    ::. .::: ::::.::.:.::: : 
NP_003 RNHPQLSAMIRGQDAEMLRYITNLEVKELRHPRTGCKFKFFFRRNPYFRNKLIVKEYEVR
           290       300       310       320       330       340   

           230       240       250       260       270       280   
pF1KB7 ITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRN
        .   .: :::: :   .: ... ::...   .::.:::::..  :.:::::. .::: :
NP_003 SSGRVVSLSTPIIWRRGHEPQSFIRRNQDLICSFFTWFSDHSLPESDKIAEIIKEDLWPN
           350       360       370       380       390       400   

           290       300                 
pF1KB7 PLQYYKRMKPPEEGTETSGDSQLLS         
       :::::                             
NP_003 PLQYYLLREGVRRARRRPLREPVEIPRPFGFQSG
           410       420       430       

>>NP_071400 (OMIM: 300564) testis-specific Y-encoded-lik  (693 aa)
 initn: 599 init1: 572 opt: 580  Z-score: 627.7  bits: 125.4 E(85289): 3.2e-28
Smith-Waterman score: 580; 39.3% identity (69.5% similar) in 239 aa overlap (61-292:166-399)

               40        50        60        70        80          
pF1KB7 CASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLV---ERR
                                     :::.....:     :   :.:..    .::
NP_071 QSSSFGGEGALETCSAVGWAPQRLVDPKSKEEAIIIVED-----EDEDERESMRSSRRRR
         140       150       160       170            180       190

        90       100           110       120       130       140   
pF1KB7 EEAQRAQQAVPGPG----PMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKP
       .. .: :. :   .        :: :. :  .:..:: :: .: ::: : ..:. . :.:
NP_071 RRRRRKQRKVKRESRERNAERMESILQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRP
              200       210       220       230       240       250

           150       160       170       180       190       200   
pF1KB7 HLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCKIML
        :.::  .:: .::::.... :::..: ::. .:::.. :...:.:.. .:     :. :
NP_071 FLERRDLIIQHIPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKL
              260       270       280       290       300       310

           210       220       230       240       250       260   
pF1KB7 FFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSD
       .:..:::: : ::.::.  : .   .::::::.:.   : .: :. ....: .::.:::.
NP_071 YFQTNPYFTNMVIVKEFQRNRSGRLVSHSTPIRWHRGQEPQARRHGNQDASHSFFSWFSN
              320       330       340       350       360       370

           270       280       290       300                       
pF1KB7 HNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS               
       :..  ...::::. .::: :::.:: : .                               
NP_071 HSLPEADRIAEIIKNDLWVNPLRYYLRERGSRIKRKKQEMKKRKTRGRCEVVIMEDAPDY
              380       390       400       410       420       430

>>XP_006724655 (OMIM: 300564) PREDICTED: testis-specific  (694 aa)
 initn: 622 init1: 572 opt: 580  Z-score: 627.7  bits: 125.4 E(85289): 3.2e-28
Smith-Waterman score: 580; 39.3% identity (69.5% similar) in 239 aa overlap (61-292:166-399)

               40        50        60        70        80          
pF1KB7 CASAKEGTAFRMEAVQEGAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLV---ERR
                                     :::.....:     :   :.:..    .::
XP_006 QSSSFGGEGALETCSAVGWAPQRLVDPKSKEEAIIIVED-----EDEDERESMRSSRRRR
         140       150       160       170            180       190

        90       100           110       120       130       140   
pF1KB7 EEAQRAQQAVPGPG----PMTPESALEELLAVQVELEPVNAQARKAFSRQREKMERRRKP
       .. .: :. :   .        :: :. :  .:..:: :: .: ::: : ..:. . :.:
XP_006 RRRRRKQRKVKRESRERNAERMESILQALEDIQLDLEAVNIKAGKAFLRLKRKFIQMRRP
              200       210       220       230       240       250

           150       160       170       180       190       200   
pF1KB7 HLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDMLSYMVSLEVEEEKHRVHLCKIML
        :.::  .:: .::::.... :::..: ::. .:::.. :...:.:.. .:     :. :
XP_006 FLERRDLIIQHIPGFWVKAFLNHPRISILINRRDEDIFRYLTNLQVQDLRHISMGYKMKL
              260       270       280       290       300       310

           210       220       230       240       250       260   
pF1KB7 FFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSD
       .:..:::: : ::.::.  : .   .::::::.:.   : .: :. ....: .::.:::.
XP_006 YFQTNPYFTNMVIVKEFQRNRSGRLVSHSTPIRWHRGQEPQARRHGNQDASHSFFSWFSN
              320       330       340       350       360       370

           270       280       290       300                       
pF1KB7 HNFAGSNKIAEILCKDLWRNPLQYYKRMKPPEEGTETSGDSQLLS               
       :..  ...::::. .::: :::.:: : .                               
XP_006 HSLPEADRIAEIIKNDLWVNPLRYYLRERGSRIKRKKQEMKKRKTRGRCEVVIMEDAPDY
              380       390       400       410       420       430

>>NP_277047 (OMIM: 614721) testis-specific Y-encoded-lik  (417 aa)
 initn: 570 init1: 537 opt: 552  Z-score: 600.7  bits: 119.7 E(85289): 1e-26
Smith-Waterman score: 552; 39.2% identity (70.0% similar) in 227 aa overlap (78-302:173-397)

        50        60        70        80        90       100       
pF1KB7 GAAGVESEQAALGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPES
                                     : :.  :   :: .. ..:  : :: . :.
NP_277 GPAGKKAPETCSTAGRGPQVIAGGRQKKGAAGENTSVSAGEEKKEERDA--GSGPPATEG
            150       160       170       180       190         200

       110       120       130       140       150       160       
pF1KB7 ALEELLAVQVELEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHP
       ... :  ::..:: .:::: .:. :  .:. . :  ::.::. .::..::::.... :::
NP_277 SMDTLENVQLKLENMNAQADRAYLRLSRKFGQLRLQHLERRNHLIQNIPGFWGQAFQNHP
              210       220       230       240       250       260

       170       180       190       200       210       220       
pF1KB7 QMSALITDEDEDMLSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNITEY
       :............:::. ::::::        :: ..:  ::::::::. :::  . .  
NP_277 QLASFLNSQEKEVLSYLNSLEVEELGLARLGYKIKFYFDRNPYFQNKVLIKEYGCGPSGQ
              270       280       290       300       310       320

       230       240       250       260       270       280       
pF1KB7 RASHSTPIEWYPDYEVEAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQY
        .:.::::.: : .....  . . ... .::.:::.:.   :.::.::. ..:: ::::.
NP_277 VVSRSTPIQWLPGHDLQSLSQGNPENNRSFFGWFSNHSSIESDKIVEIINEELWPNPLQF
              330       340       350       360       370       380

       290         300                      
pF1KB7 YKRMKPP--EEGTETSGDSQLLS              
       :   .    :.: :  :                    
NP_277 YLLSEGARVEKGKEKEGRQGPGKQPMETTQPGVSQSN
              390       400       410       

>>NP_001234930 (OMIM: 600960) protein SET isoform 4 [Hom  (266 aa)
 initn: 448 init1: 312 opt: 346  Z-score: 381.3  bits: 78.4 E(85289): 1.7e-14
Smith-Waterman score: 500; 35.0% identity (66.8% similar) in 226 aa overlap (92-305:4-229)

              70        80        90       100       110       120 
pF1KB7 EAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVELEP
                                     :..:  : :     . :.:..  :: :.. 
NP_001                            MMPRSHQPPPPPHEKEQQEAIEHIDEVQNEIDR
                                          10        20        30   

             130       140       150       160       170       180 
pF1KB7 VNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDEDML
       .: :: . . . ..:... :.: ...:. .: ..:.::.....::::.:::. .:::. :
NP_001 LNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAL
            40        50        60        70        80        90   

             190       200       210       220       230       240 
pF1KB7 SYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWYPDY
        :.. .:: : .      .: ..:  ::::.:::..::. .: .   .:.:: :.:    
NP_001 HYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWKSGK
           100       110       120       130       140       150   

                      250       260       270       280         290
pF1KB7 EV---------EAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYY--KR
       ..         .: :.:.:.   .::.::.::. ::.....:..  :.: ::::::    
NP_001 DLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPD
           160       170       180       190       200       210   

               300                                          
pF1KB7 MKPPE-EGTETSGDSQLLS                                  
       :   : :: : . :..                                     
NP_001 MDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
           220       230       240       250       260      

>>NP_001116293 (OMIM: 600960) protein SET isoform 1 [Hom  (290 aa)
 initn: 448 init1: 312 opt: 341  Z-score: 375.3  bits: 77.5 E(85289): 3.6e-14
Smith-Waterman score: 495; 34.5% identity (66.4% similar) in 229 aa overlap (89-305:25-253)

       60        70        80        90       100       110        
pF1KB7 LGEEAVLLLDDIMAEVEVVAEEEGLVERREEAQRAQQAVPGPGPMTPESALEELLAVQVE
                                     :   :. ..:  :    . :.:..  :: :
NP_001       MAPKRQSPLPPQKKKPRPPPALGPEETSASAGLPKKGEKEQQEAIEHIDEVQNE
                     10        20        30        40        50    

      120       130       140       150       160       170        
pF1KB7 LEPVNAQARKAFSRQREKMERRRKPHLDRRGAVIQSVPGFWANVIANHPQMSALITDEDE
       .. .: :: . . . ..:... :.: ...:. .: ..:.::.....::::.:::. .:::
NP_001 IDRLNEQASEEILKVEQKYNKLRQPFFQKRSELIAKIPNFWVTTFVNHPQVSALLGEEDE
           60        70        80        90       100       110    

      180       190       200       210       220       230        
pF1KB7 DMLSYMVSLEVEEEKHRVHLCKIMLFFRSNPYFQNKVITKEYLVNITEYRASHSTPIEWY
       . : :.. .:: : .      .: ..:  ::::.:::..::. .: .   .:.:: :.: 
NP_001 EALHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNESGDPSSKSTEIKWK
          120       130       140       150       160       170    

      240                250       260       270       280         
pF1KB7 PDYEV---------EAYRRRHHNSSLNFFNWFSDHNFAGSNKIAEILCKDLWRNPLQYY-
          ..         .: :.:.:.   .::.::.::. ::.....:..  :.: :::::: 
NP_001 SGKDLTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYL
          180       190       200       210       220       230    

       290        300                                          
pF1KB7 -KRMKPPE-EGTETSGDSQLLS                                  
          :   : :: : . :..                                     
NP_001 VPDMDDEEGEGEEDDDDDEEEEGLEDIDEEGDEDEGEEDEDDDEGEEGEEDEGEDD
          240       250       260       270       280       290




308 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 07:44:05 2016 done: Fri Nov  4 07:44:06 2016
 Total Scan time:  7.980 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com